Merge remote-tracking branch 'cgal/master' into Triangulation_3-CDT_3-lrineau

.github/workflows/reuse.yml

@@ -12,15 +12,15 @@ jobs:
     steps:
     - uses: actions/checkout@v4
     - name: REUSE version
-      uses: fsfe/reuse-action@v3
+      uses: fsfe/reuse-action@v4
       with:
         args: --version
     - name: REUSE lint
-      uses: fsfe/reuse-action@v3
+      uses: fsfe/reuse-action@v4
       with:
         args: --include-submodules lint
     - name: REUSE SPDX SBOM
-      uses: fsfe/reuse-action@v3
+      uses: fsfe/reuse-action@v4
       with:
         args: spdx
     - name: install dependencies
@@ -30,6 +30,6 @@ jobs:
         mkdir -p ./release
         cmake -DDESTINATION=./release -DCGAL_VERSION=9.9 -P ./Scripts/developer_scripts/cgal_create_release_with_cmake.cmake
     - name: REUSE lint release tarball
-      uses: fsfe/reuse-action@v3
+      uses: fsfe/reuse-action@v4
       with:
         args: --root ./release/CGAL-9.9 --include-submodules lint

.reuse/dep5

@@ -1,12 +0,0 @@
-Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Upstream-Name: CGAL
-Upstream-Contact: CGAL Editorial Board <info@cgal.org>
-Source: https://github.com/CGAL/cgal
-
-Files: .* *.cmake *.md .github/* Maintenance/* */TODO */doc/* */deb/* */applications/* */doc_html/* */scripts/* */developer_scripts/* */demo/* */examples/* */src/* */test/* */benchmarks/* */benchmark/* */package_info/* */data/* */cmake/*
-Copyright: 1995-2023 The CGAL Project
-License: CC0-1.0
-
-Files: CMakeLists.txt GraphicsView/include/CGAL/Qt/ImageInterface.ui GraphicsView/include/CGAL/Qt/resources/qglviewer-icon.xpm Installation/AUTHORS Installation/CMakeLists.txt Installation/README Installation/auxiliary/cgal_create_cmake_script.1 Installation/auxiliary/gmp/README Installation/include/CGAL/license/gpl_package_list.txt MacOSX/auxiliary/cgal_app.icns copyright
-Copyright: 1995-2023 The CGAL Project
-License: CC0-1.0

Algebraic_foundations/include/CGAL/Test/_test_algebraic_structure.h

@@ -426,7 +426,7 @@ void test_algebraic_structure_intern(
     //commutative
     assert(a+b+c==c+b+a);
     assert(a*b*c==c*b*a);
-    //distributiv
+    //distributive
     assert((a-b)*c==a*c-b*c);
     assert((a+b)*c==a*c+b*c);
     //binom

Arrangement_on_surface_2/demo/Arrangement_on_surface_2/ArrangementDemoTab.h

@@ -38,7 +38,6 @@ namespace Qt
 {
 class Callback;
 class ArrangementGraphicsItemBase;
-class ArrangementGraphicsItemBase;
 class GraphicsViewCurveInputBase;
 class GraphicsViewNavigation;
 enum class CurveType;

Arrangement_on_surface_2/demo/Arrangement_on_surface_2/CurveInputMethods.cpp

@@ -111,13 +111,10 @@ void CurveInputMethod::beginInput_()
 
 static inline void clearPainterPath(QPainterPath& ppath)
 {
-#if (QT_VERSION >= QT_VERSION_CHECK(5, 13, 0))
   ppath.clear();
-#else
-  ppath = {};
-#endif
 }
 
+
 void CurveInputMethod::reset()
 {
   this->resetInput();

Arrangement_on_surface_2/demo/Arrangement_on_surface_2/GridGraphicsItem.cpp

@@ -67,11 +67,7 @@ void GridGraphicsItem::setSpacing(int spacing_)
 static inline qreal
 horizontalAdvance(const QFontMetrics& fm, const QString& text)
 {
-#if (QT_VERSION >= QT_VERSION_CHECK(5, 11, 0))
   return fm.horizontalAdvance(text);
-#else
-  return fm.boundingRect(text).width();
-#endif
 }
 
 void GridGraphicsItem::paint(

Arrangement_on_surface_2/include/CGAL/Arr_geodesic_arc_on_sphere_traits_2.h

@@ -641,8 +641,7 @@ public:
      * \param[in] plane the containing plane.
      * \param[in] source the source-point direction.
      * \param[in] target the target-point direction.
-     * \pre Both endpoint lie on the given plane.
-     * \pre Both endpoint lie on the given plane.
+     * \pre Both endpoints lie on the given plane.
      */
     X_monotone_curve_2 operator()(const Point_2& source, const Point_2& target,
                                   const Direction_3& normal) const
@@ -3113,7 +3112,7 @@ public:
    * \param is_directed_right is the arc directed from left to right?
    * \param is_full is the arc a full circle?
    * \param is_degenerate is the arc degenerate (single point)?
-   * \pre Both endpoint lie on the given plane.
+   * \pre Both endpoints lie on the given plane.
    */
   Arr_x_monotone_geodesic_arc_on_sphere_3
   (const Arr_extended_direction_3& src,
@@ -3312,8 +3311,7 @@ public:
    * \param plane the containing plane.
    * \param source the source-point direction.
    * \param target the target-point direction.
-   * \pre Both endpoint lie on the given plane.
-   * \pre Both endpoint lie on the given plane.
+   * \pre Both endpoints lie on the given plane.
    */
   Arr_x_monotone_geodesic_arc_on_sphere_3
   (const Arr_extended_direction_3& source,

Arrangement_on_surface_2/test/Arrangement_on_surface_2/data/circle_segments/intersect

@@ -1,6 +1,6 @@
 # Input is based on the curves and points indexes from intersect.pt 
 # intersect.xcv. The first two numbers are the numbers of the input curves
-# to be intersected. After that there is the number of intesections and 
+# to be intersected. After that there is the number of intersections and 
 # 2-3 numbers representing each intersection. Meaning, the input is of the form:
 # intersect <id of 1st x-curve> <id of 2nd x-curve> \
 # <expected number of intersections> [<type of intersection> \

BGL/examples/BGL_OpenMesh/CMakeLists.txt

@@ -9,9 +9,9 @@ find_package(CGAL REQUIRED)
 
 find_package(OpenMesh)
 if(OpenMesh_FOUND)
-  include(UseOpenMesh)
+  include(CGAL_OpenMesh_support)
   create_single_source_cgal_program("TriMesh.cpp")
-  target_link_libraries(TriMesh PRIVATE ${OPENMESH_LIBRARIES})
+  target_link_libraries(TriMesh PRIVATE CGAL::OpenMesh_support)
 else()
   message("NOTICE: This project requires OpenMesh and will not be compiled.")
 endif()

BGL/examples/BGL_polyhedron_3/CMakeLists.txt

@@ -18,8 +18,8 @@ create_single_source_cgal_program("copy_polyhedron.cpp")
 
 find_package(OpenMesh QUIET)
 if(OpenMesh_FOUND)
-  target_link_libraries(copy_polyhedron PRIVATE ${OPENMESH_LIBRARIES})
-  target_compile_definitions(copy_polyhedron PRIVATE -DCGAL_USE_OPENMESH)
+  include(CGAL_OpenMesh_support)
+  target_link_libraries(copy_polyhedron PRIVATE CGAL::OpenMesh_support)
 else()
   message(STATUS "NOTICE: The example 'copy_polyhedron' will not use OpenMesh.")
 endif()

BGL/include/CGAL/boost/graph/copy_face_graph.h

@@ -62,13 +62,15 @@ void copy_face_graph_impl(const SourceMesh& sm, TargetMesh& tm,
   const tm_face_descriptor tm_null_face = boost::graph_traits<TargetMesh>::null_face();
   const tm_vertex_descriptor tm_null_vertex = boost::graph_traits<TargetMesh>::null_vertex();
 
-  reserve(tm, static_cast<typename boost::graph_traits<TargetMesh>::vertices_size_type>(vertices(tm).size()+vertices(sm).size()),
-              static_cast<typename boost::graph_traits<TargetMesh>::edges_size_type>(edges(tm).size()+edges(sm).size()),
-              static_cast<typename boost::graph_traits<TargetMesh>::faces_size_type>(faces(tm).size()+faces(sm).size()) );
+  reserve(tm, static_cast<typename boost::graph_traits<TargetMesh>::vertices_size_type>(internal::exact_num_vertices(tm)+internal::exact_num_vertices(sm)),
+              static_cast<typename boost::graph_traits<TargetMesh>::edges_size_type>(internal::exact_num_edges(tm)+internal::exact_num_edges(sm)),
+              static_cast<typename boost::graph_traits<TargetMesh>::faces_size_type>(internal::exact_num_faces(tm)+internal::exact_num_faces(sm)) );
 
   //insert halfedges and create each vertex when encountering its halfedge
   std::vector<tm_edge_descriptor> new_edges;
-  new_edges.reserve(edges(sm).size());
+  std::vector<tm_halfedge_descriptor> new_vertices;
+  new_edges.reserve(internal::exact_num_edges(sm));
+  new_vertices.reserve(internal::exact_num_vertices(sm));
   for(sm_edge_descriptor sm_e : edges(sm))
   {
     tm_edge_descriptor tm_e = add_edge(tm);
@@ -106,6 +108,7 @@ void copy_face_graph_impl(const SourceMesh& sm, TargetMesh& tm,
       tm_vertex_descriptor tm_h_tgt = add_vertex(tm);
       *v2v++=std::make_pair(sm_h_tgt, tm_h_tgt);
       set_halfedge(tm_h_tgt, tm_h, tm);
+      new_vertices.push_back(tm_h);
       set_target(tm_h, tm_h_tgt, tm);
       put(tm_vpm, tm_h_tgt, conv(get(sm_vpm, sm_h_tgt)));
     }
@@ -116,6 +119,7 @@ void copy_face_graph_impl(const SourceMesh& sm, TargetMesh& tm,
       tm_vertex_descriptor tm_h_src = add_vertex(tm);
       *v2v++=std::make_pair(sm_h_src, tm_h_src);
       set_halfedge(tm_h_src, tm_h_opp, tm);
+      new_vertices.push_back(tm_h_opp);
       set_target(tm_h_opp, tm_h_src, tm);
       put(tm_vpm, tm_h_src, conv(get(sm_vpm, sm_h_src)));
     }
@@ -163,11 +167,9 @@ void copy_face_graph_impl(const SourceMesh& sm, TargetMesh& tm,
     }
   }
   // update halfedge vertex of all but the vertex halfedge
-  for(tm_vertex_descriptor v : vertices(tm))
+  for(tm_halfedge_descriptor h : new_vertices)
   {
-    tm_halfedge_descriptor h = halfedge(v, tm);
-    if (h==boost::graph_traits<TargetMesh>::null_halfedge())
-      continue;
+    tm_vertex_descriptor v = target(h, tm);
     tm_halfedge_descriptor next_around_vertex=h;
     do{
       next_around_vertex=opposite(next(next_around_vertex, tm), tm);

BGL/test/BGL/CMakeLists.txt

@@ -42,50 +42,31 @@ create_single_source_cgal_program("test_deprecated_io.cpp")
 
 find_package(OpenMesh QUIET)
 if(OpenMesh_FOUND)
-  include(UseOpenMesh)
-  add_definitions(-DCGAL_USE_OPENMESH)
+  include(CGAL_OpenMesh_support)
 
-  target_link_libraries(test_clear PRIVATE ${OPENMESH_LIBRARIES})
-  target_compile_definitions(test_clear PRIVATE -DCGAL_USE_OPENMESH)
-  target_link_libraries(test_Euler_operations PRIVATE ${OPENMESH_LIBRARIES})
-  target_compile_definitions(test_Euler_operations PRIVATE -DCGAL_USE_OPENMESH)
-  target_link_libraries(test_Collapse_edge PRIVATE ${OPENMESH_LIBRARIES})
-  target_compile_definitions(test_Collapse_edge PRIVATE -DCGAL_USE_OPENMESH)
-  target_link_libraries(test_Face_filtered_graph PRIVATE ${OPENMESH_LIBRARIES})
-  target_compile_definitions(test_Face_filtered_graph PRIVATE -DCGAL_USE_OPENMESH)
-  target_link_libraries(test_graph_traits PRIVATE ${OPENMESH_LIBRARIES} )
-  target_compile_definitions(test_graph_traits PRIVATE -DCGAL_USE_OPENMESH)
-  target_link_libraries(test_Properties PRIVATE ${OPENMESH_LIBRARIES})
-  target_compile_definitions(test_Properties PRIVATE -DCGAL_USE_OPENMESH)
-  target_link_libraries(test_bgl_read_write PRIVATE ${OPENMESH_LIBRARIES})
-  target_compile_definitions(test_bgl_read_write PRIVATE -DCGAL_USE_OPENMESH)
+  target_link_libraries(test_clear PRIVATE CGAL::OpenMesh_support)
+  target_link_libraries(test_Euler_operations PRIVATE CGAL::OpenMesh_support)
+  target_link_libraries(test_Collapse_edge PRIVATE CGAL::OpenMesh_support)
+  target_link_libraries(test_Face_filtered_graph PRIVATE CGAL::OpenMesh_support)
+  target_link_libraries(test_graph_traits PRIVATE CGAL::OpenMesh_support )
+  target_link_libraries(test_Properties PRIVATE CGAL::OpenMesh_support)
+  target_link_libraries(test_bgl_read_write PRIVATE CGAL::OpenMesh_support)
 
   create_single_source_cgal_program("graph_concept_OpenMesh.cpp")
-  target_link_libraries(graph_concept_OpenMesh PRIVATE ${OPENMESH_LIBRARIES})
+  target_link_libraries(graph_concept_OpenMesh PRIVATE CGAL::OpenMesh_support)
 else()
   message(STATUS "NOTICE: Tests that use OpenMesh will not be compiled.")
 endif()
 
-find_package(VTK QUIET COMPONENTS vtkCommonCore vtkIOCore vtkIOLegacy vtkIOXML vtkFiltersCore vtkFiltersSources)
-if (VTK_FOUND)
-  if(VTK_USE_FILE)
-    include(${VTK_USE_FILE})
-  endif()
-
-  if ("${VTK_VERSION_MAJOR}" GREATER "5" OR VTK_VERSION VERSION_GREATER 5)
-    if(TARGET VTK::CommonCore)
-      set(VTK_LIBRARIES VTK::CommonCore VTK::IOCore VTK::IOLegacy VTK::IOXML VTK::FiltersCore VTK::FiltersSources)
-    endif()
-
-    if(VTK_LIBRARIES)
-      target_link_libraries(test_bgl_read_write PRIVATE ${VTK_LIBRARIES})
-      target_compile_definitions(test_bgl_read_write PRIVATE -DCGAL_USE_VTK -DNOMINMAX)
-      target_link_libraries(test_deprecated_io PRIVATE ${VTK_LIBRARIES})
-      target_compile_definitions(test_deprecated_io PRIVATE -DCGAL_USE_VTK -DNOMINMAX)
-    else()
-      message(STATUS "Tests that use VTK will not be compiled.")
-    endif()
-  endif()
+find_package(VTK 9.0 QUIET COMPONENTS CommonCore IOCore IOLegacy IOXML FiltersCore FiltersSources)
+if (VTK_FOUND AND VTK_LIBRARIES)
+  message(STATUS "VTK ${VTK_VERSION} found ${VTK_LIBRARIES}")
+  target_link_libraries(test_bgl_read_write PRIVATE ${VTK_LIBRARIES})
+  target_compile_definitions(test_bgl_read_write PRIVATE -DCGAL_USE_VTK -DNOMINMAX)
+  target_link_libraries(test_deprecated_io PRIVATE ${VTK_LIBRARIES})
+  target_compile_definitions(test_deprecated_io PRIVATE -DCGAL_USE_VTK -DNOMINMAX)
+else()
+  message(STATUS "Tests that use VTK will not be compiled.")
 endif() #VTK_FOUND
 
 find_path(3MF_INCLUDE_DIR

BGL/test/BGL/test_Euler_operations.cpp

@@ -17,6 +17,7 @@ test_copy_face_graph_nm_umbrella()
   T g;
   Kernel::Point_3 p(0,0,0);
 
+  // make two connected components
   CGAL::make_tetrahedron(p, p, p, p, g);
   CGAL::make_tetrahedron(p, p, p, p, g);
 

Boolean_set_operations_2/doc/Boolean_set_operations_2/CGAL/Boolean_set_operations_2.h

@@ -1104,7 +1104,7 @@ do_intersect(const General_polygon_with_holes_2<General_polygon_2<ArrTraits>>& p
  * \param traits a traits object.
  * \return `true` if `pgn1` and `pgn2` intersect in their interior and `false`
  *         otherwise.
- * \pre `GpsTraits` must be a model of the concept `GeneralPolygonSetTraits_2`.
+ *
  * \pre `GpsTraits` must be a model of the concept `GeneralPolygonSetTraits_2`.
  */
 template <typename Polygon, typename GpsTraits>

Boolean_set_operations_2/include/CGAL/Boolean_set_operations_2/Gps_on_surface_base_2.h

@@ -642,6 +642,7 @@ public:
     unsigned int i = 1;
     for (InputIterator itr = begin; itr != end; ++itr, ++i)
     {
+      ValidationPolicy::is_valid((*itr), *m_traits);
       arr_vec[i].first = new Aos_2(m_traits);
       _insert(*itr, *(arr_vec[i].first));
     }
@@ -666,6 +667,7 @@ public:
     unsigned int i = 1;
     for (InputIterator itr = begin; itr!=end; ++itr, ++i)
     {
+      ValidationPolicy::is_valid((*itr), *m_traits);
       arr_vec[i].first = new Aos_2(m_traits);
       _insert(*itr, *(arr_vec[i].first));
     }

Circulator/test/Circulator/test_circ1.cpp

@@ -2380,7 +2380,6 @@ void test_circulator_from_iterator() {
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == c);
-        assert( i == c);
         // Do I reach myself.
         ++i;
         Circulator j = i;
@@ -2493,7 +2492,6 @@ void test_circulator_from_iterator() {
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == c);
-        assert( i == c);
         // Do I reach myself.
         ++i;
         Circulator j = i;
@@ -2735,7 +2733,6 @@ void test_circulator_from_iterator() {
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == c);
-        assert( i == c);
         // Do I reach myself.
         ++i;
         Circulator j = i;
@@ -2897,7 +2894,6 @@ void test_circulator_from_iterator() {
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == c);
-        assert( i == c);
         // Do I reach myself.
         ++i;
         Circulator j = i;
@@ -3308,7 +3304,6 @@ void test_circulator_from_iterator() {
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == c);
-        assert( i == c);
         // Do I reach myself.
         ++i;
         Circulator j = i;
@@ -3533,7 +3528,6 @@ void test_circulator_from_iterator() {
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == c);
-        assert( i == c);
         // Do I reach myself.
         ++i;
         Circulator j = i;
@@ -3742,7 +3736,6 @@ void test_circulator_from_container() {
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == c);
-        assert( i == c);
         // Do I reach myself.
         ++i;
         Circulator j = i;
@@ -3855,7 +3848,6 @@ void test_circulator_from_container() {
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == c);
-        assert( i == c);
         // Do I reach myself.
         ++i;
         Circulator j = i;
@@ -4097,7 +4089,6 @@ void test_circulator_from_container() {
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == c);
-        assert( i == c);
         // Do I reach myself.
         ++i;
         Circulator j = i;
@@ -4260,7 +4251,6 @@ void test_circulator_from_container() {
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == c);
-        assert( i == c);
         // Do I reach myself.
         ++i;
         Circulator j = i;
@@ -4671,7 +4661,6 @@ void test_circulator_from_container() {
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == c);
-        assert( i == c);
         // Do I reach myself.
         ++i;
         Circulator j = i;
@@ -4897,7 +4886,6 @@ void test_circulator_from_container() {
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == c);
-        assert( i == c);
         // Do I reach myself.
         ++i;
         Circulator j = i;

Circulator/test/Circulator/test_circ2.cpp

@@ -304,7 +304,6 @@ void test_struct(){
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == start);
-        assert( i == start);
         // Do I reach myself.
         ++i;
         Struct_circulator j = i;
@@ -413,7 +412,6 @@ void test_struct(){
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == start);
-        assert( i == start);
         // Do I reach myself.
         ++i;
         Struct_const_circulator j = i;
@@ -651,7 +649,6 @@ void test_struct(){
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == start);
-        assert( i == start);
         // Do I reach myself.
         ++i;
         Struct_bi_circulator j = i;
@@ -809,7 +806,6 @@ void test_struct(){
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == start);
-        assert( i == start);
         // Do I reach myself.
         ++i;
         Struct_bi_const_circulator j = i;
@@ -969,7 +965,6 @@ void test_class(){
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == start);
-        assert( i == start);
         // Do I reach myself.
         ++i;
         Class_circulator j = i;
@@ -1078,7 +1073,6 @@ void test_class(){
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == start);
-        assert( i == start);
         // Do I reach myself.
         ++i;
         Class_const_circulator j = i;
@@ -1316,7 +1310,6 @@ void test_class(){
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == start);
-        assert( i == start);
         // Do I reach myself.
         ++i;
         Class_bi_circulator j = i;
@@ -1474,7 +1467,6 @@ void test_class(){
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == start);
-        assert( i == start);
         // Do I reach myself.
         ++i;
         Class_bi_const_circulator j = i;
@@ -1891,7 +1883,6 @@ void test_array() {
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == start);
-        assert( i == start);
         // Do I reach myself.
         ++i;
         Circulator j = i;
@@ -2119,7 +2110,6 @@ void test_array() {
         assert( ! (i == nullptr));
         assert(   i != nullptr);
         assert( i == start);
-        assert( i == start);
         // Do I reach myself.
         ++i;
         Circulator j = i;

Classification/examples/Classification/example_classification.cpp

@@ -48,7 +48,7 @@ typedef Classification::Feature::Vertical_dispersion<Kernel, Point_range, Pmap>
 
 int main (int argc, char** argv)
 {
-  const std::string filename = (argc > 1) ? argv[1] : CGAL::data_file_path("meshes/b9.ply");
+  const std::string filename = (argc > 1) ? argv[1] : CGAL::data_file_path("points_3/b9.ply");
 
   std::cerr << "Reading input" << std::endl;
   std::vector<Point> pts;

Classification/examples/Classification/example_cluster_classification.cpp

@@ -48,7 +48,7 @@ typedef Classification::Cluster<Point_set, Pmap>                             Clu
 
 int main (int argc, char** argv)
 {
-  std::string filename        = CGAL::data_file_path("meshes/b9.ply");
+  std::string filename        = CGAL::data_file_path("points_3/b9.ply");
   std::string filename_config = "data/b9_clusters_config.bin";
 
   if (argc > 1)

Classification/examples/Classification/example_feature.cpp

@@ -66,7 +66,7 @@ public:
 
 int main (int argc, char** argv)
 {
-  std::string filename (argc > 1 ? argv[1] : CGAL::data_file_path("meshes/b9.ply"));
+  std::string filename (argc > 1 ? argv[1] : CGAL::data_file_path("points_3/b9.ply"));
   std::vector<Point> pts;
 
   std::cerr << "Reading input" << std::endl;

Combinatorial_map/include/CGAL/Combinatorial_map.h

@@ -1780,7 +1780,6 @@ namespace CGAL {
     void basic_link_beta_for_involution(Dart_descriptor adart1, Dart_descriptor adart2,
                                         unsigned int i)
     {
-      CGAL_assertion( i>=2 && i<=dimension );
       CGAL_assertion( i>=2 && i<=dimension );
       dart_link_beta(adart1, adart2, i);
       dart_link_beta(adart2, adart1, i);

Combinatorial_map/test/Combinatorial_map/CMakeLists.txt

@@ -28,13 +28,12 @@ create_single_source_cgal_program(cmap_test_split_attribute.cpp)
 
 # Link with OpenMesh if possible
 find_package(OpenMesh QUIET)
-if(TARGET OpenMesh::OpenMesh)
+if(OpenMesh_FOUND)
   message(STATUS "Found OpenMesh")
+  include(CGAL_OpenMesh_support)
 
-  target_link_libraries(Combinatorial_map_copy_test PRIVATE OpenMesh::OpenMesh)
-  target_compile_definitions(Combinatorial_map_copy_test PRIVATE -DCGAL_USE_OPENMESH)
-  target_link_libraries(Combinatorial_map_copy_test_index PRIVATE OpenMesh::OpenMesh)
-  target_compile_definitions(Combinatorial_map_copy_test_index PRIVATE -DCGAL_USE_OPENMESH)
+  target_link_libraries(Combinatorial_map_copy_test PRIVATE CGAL::OpenMesh_support)
+  target_link_libraries(Combinatorial_map_copy_test_index PRIVATE CGAL::OpenMesh_support)
 else()
   message(STATUS "NOTICE: Tests will not use OpenMesh.")
 endif()

Convex_decomposition_3/include/CGAL/Convex_decomposition_3/External_structure_builder.h

@@ -76,62 +76,13 @@ class External_structure_builder : public Modifier_base<typename Nef_::SNC_and_P
 
     SNC_structure* sncp(sncpl.sncp);
     SNC_point_locator* pl(sncpl.pl);
-
-
-
-    Unique_hash_map<SHalfedge_handle, SFace_handle> sedge2sface;
-    /*
-    SFace_iterator sfi;
-    CGAL_forall_sfaces(sfi, *sncp) {
-      SFace_cycle_iterator sfc;
-      for(sfc = sfi->sface_cycles_begin(); sfc != sfi->sface_cycles_end(); ++sfc) {
-        if(sfc.is_shalfedge()){
-          SHalfedge_around_sface_circulator eaf(sfc), end(eaf);
-          CGAL_For_all(eaf,end) {
-            SHalfedge_handle se(eaf);
-            sedge2sface[eaf] = sfi;
-          }
-        }
-      }
-    }
-
-    //    CGAL::SNC_io_parser<SNC_structure> O0(std::cerr, *sncp, false);
-    //    O0.print();
-
-    SHalfedge_iterator sei;
-    CGAL_forall_shalfedges(sei, *sncp) {
-      SHalfedge_handle se(sei);
-      if(sedge2sface[se] == SFace_handle()) {
-        SM_decorator SD(&*sei->source()->source());
-        SFace_handle sf_new = SD.new_sface();
-        sf_new->mark() = sei->incident_sface()->mark();
-
-        CGAL_NEF_TRACEN("new entry sedge " << sei->source()->point()
-                        << "->" << sei->twin()->source()->point()
-                        << " at " << sei->source()->source()->point());
-
-        SD.link_as_face_cycle(sei, sf_new);
-
-        SHalfedge_around_sface_circulator eaf(se), end(eaf);
-        CGAL_For_all(eaf,end) {
-          SHalfedge_handle se(eaf);
-          sedge2sface[eaf] = sf_new;
-        }
-
-        // TODO: relink inner sface cycles
-      }
-    }
-    */
     SNC_point_locator* old_pl = pl;
     pl = pl->clone();
     sncpl.pl = pl;
-    delete old_pl;
     SNC_external_structure C(*sncp,pl);
     C.clear_external_structure();
     C.build_external_structure();
-
-    //    CGAL::SNC_io_parser<SNC_structure> Ox(std::cerr, *sncp, false);
-    //    Ox.print();
+    delete old_pl;
   }
 };
 

Convex_decomposition_3/test/Convex_decomposition_3/cd_nested_holes_test.cpp

@@ -0,0 +1,53 @@
+#include <CGAL/Exact_predicates_exact_constructions_kernel.h>
+#include <CGAL/Polyhedron_3.h>
+#include <CGAL/Nef_polyhedron_3.h>
+#include <CGAL/IO/Nef_polyhedron_iostream_3.h>
+#include <CGAL/Nef_3/SNC_indexed_items.h>
+#include <CGAL/convex_decomposition_3.h>
+#include <list>
+
+typedef CGAL::Exact_predicates_exact_constructions_kernel Kernel;
+typedef CGAL::Polyhedron_3<Kernel> Polyhedron_3;
+typedef CGAL::Nef_polyhedron_3<Kernel, CGAL::SNC_indexed_items> Nef_polyhedron_3;
+typedef Nef_polyhedron_3::Volume_const_iterator Volume_const_iterator;
+
+std::size_t run(std::string path)
+{
+  Polyhedron_3 input;
+  std::ifstream(path) >> input;
+
+  Nef_polyhedron_3 N(input);
+
+  CGAL::convex_decomposition_3(N);
+  std::list<Polyhedron_3> convex_parts;
+
+  Volume_const_iterator ci = ++N.volumes_begin();
+  for( ; ci != N.volumes_end(); ++ci) {
+    if(ci->mark()) {
+      Polyhedron_3 P;
+      N.convert_inner_shell_to_polyhedron(ci->shells_begin(), P);
+      convex_parts.push_back(P);
+    }
+  }
+
+//  int i=0;
+  for (const Polyhedron_3& P : convex_parts)
+  {
+//    std::ofstream("out_"+std::to_string(i++)+".off") << std::setprecision(17) << P;
+    assert(P.size_of_vertices()!=0);
+  }
+
+  return convex_parts.size();
+}
+
+int main()
+{
+  std::size_t val = run("data/in1.off");
+  assert(val==9);
+  val = run("data/in2.off");
+  assert(val==10);
+  val = run("data/in3.off");
+  assert(val==13);
+  val = run("data/in4.off");
+  assert(val==17);
+}

Convex_decomposition_3/test/Convex_decomposition_3/data/in1.off

@@ -0,0 +1,117 @@
+OFF 40 76 0
+5 -5 4 
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+3 38 32 37
+3 32 38 33

Convex_decomposition_3/test/Convex_decomposition_3/data/in2.off

@@ -0,0 +1,144 @@
+OFF
+48 92 0
+
+2 2 2
+2 -2 2
+-2 2 2
+-2 -2 2
+-2 2 4
+2 2 4
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+-6 6 -2
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+-6 6 2
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+4 -4 2
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+3  3 6 4
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+3  45 3 2
+3  46 45 0
+3  46 0 47
+3  47 0 1
+

Convex_decomposition_3/test/Convex_decomposition_3/data/in3.off

@@ -0,0 +1,180 @@
+OFF
+60 116 0
+
+1 1 4
+1 0.33333333333333337 4
+1 -1 4
+0.33333333333333337 -1 4
+-1 -1 4
+-1 0.33333333333333337 4
+-1 1 4
+0.33333333333333337 1 4
+-2 2 2
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+3  7 6 59
+

Convex_decomposition_3/test/Convex_decomposition_3/data/in4.off

@@ -0,0 +1,180 @@
+OFF
+60 116 0
+
+1 1 4
+1 0.5 4
+1 -1 4
+0.5 -1 4
+-1 -1 4
+-1 0.5 4
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+3  4 3 58
+3  59 5 58
+3  7 6 59
+

Convex_hull_3/examples/Convex_hull_3/CMakeLists.txt

@@ -21,13 +21,13 @@ create_single_source_cgal_program("extreme_indices_3.cpp")
 
 find_package(OpenMesh QUIET)
 if(OpenMesh_FOUND)
-  include(UseOpenMesh)
+  include(CGAL_OpenMesh_support)
   message(STATUS "Found OpenMesh")
 
   create_single_source_cgal_program("quickhull_OM_3.cpp")
-  target_link_libraries(quickhull_OM_3 PRIVATE ${OPENMESH_LIBRARIES})
+  target_link_libraries(quickhull_OM_3 PRIVATE CGAL::OpenMesh_support)
   create_single_source_cgal_program("dynamic_hull_OM_3.cpp")
-  target_link_libraries(dynamic_hull_OM_3 PRIVATE ${OPENMESH_LIBRARIES})
+  target_link_libraries(dynamic_hull_OM_3 PRIVATE CGAL::OpenMesh_support)
 else()
   message(STATUS "NOTICE: Examples that use OpenMesh will not be compiled.")
 endif()

Distance_3/test/Distance_3/test_distance_3.cpp

@@ -160,7 +160,6 @@ private:
     assert(are_equal(res_o2o1, expected_result));
 
     do_intersect_check(o1, o2);
-    do_intersect_check(o1, o2);
   }
 
   template <typename O1, typename O2>
@@ -169,7 +168,6 @@ private:
     const FT res_o1o2 = CGAL::squared_distance(o1, o2);
     const FT res_o2o1 = CGAL::squared_distance(o2, o1);
 
-    do_intersect_check(o1, o2);
     do_intersect_check(o1, o2);
 
     assert(res_o1o2 <= ubound);
@@ -324,7 +322,7 @@ private:
       check_squared_distance(S{p2, p3}, S{p4, p5}, 0);
       check_squared_distance(S{p2, p3}, S{p5, p4}, 0);
       check_squared_distance(S{p3, p2}, S{p4, p5}, 0);
-      check_squared_distance(S{p3, p2}, S{p4, p5}, 0);
+      check_squared_distance(S{p3, p2}, S{p5, p4}, 0);
 
       const double lambda_6 = r.get_double(0, 1);
       const P p6 = p3 + FT(lambda_6) * V{p3 - p2};
@@ -332,7 +330,7 @@ private:
       check_squared_distance(S{p2, p3}, S{p6, p5}, 0);
       check_squared_distance(S{p2, p3}, S{p5, p6}, 0);
       check_squared_distance(S{p3, p2}, S{p6, p5}, 0);
-      check_squared_distance(S{p3, p2}, S{p6, p5}, 0);
+      check_squared_distance(S{p3, p2}, S{p5, p6}, 0);
 
       const double lambda_7 = r.get_double(1, 2);
       const P p7 = p3 + FT(lambda_7) * V{p3 - p2};

Documentation/doc/Documentation/Third_party.txt

@@ -72,23 +72,32 @@ As there is no canonical directory for where to find \boost on Windows,
 we recommend that you define the environment variable
 `BOOST_ROOT` and set it to where you have installed \boost, e.g., `C:\boost\boost_1_70_0`.
 
-\subsection thirdpartyMPFR GNU Multiple Precision Arithmetic (GMP) and GNU Multiple Precision Floating-Point Reliably (MPFR) Libraries
-<b>GMP Version 5.0.1 or later, MPFR Version 3.0.0 or later</b>
+\subsection thirdpartyMP Multi Precision Number Type Library
 
-The components \cgal, `CGAL_Core`, and `CGAL_Qt6` require
-\gmp and \mpfr which are libraries for multi precision integers and rational numbers,
-and for multi precision floating point numbers.
-
-\cgal combines floating point arithmetic with exact arithmetic
-in order to be efficient and reliable. \cgal has a built-in
-number type for that, but \gmp and \mpfr provide a faster
-solution, and we recommend using them.
+GNU Multiple Precision Arithmetic (GMP) and GNU Multiple Precision Floating-Point Reliably (MPFR) Libraries
+are libraries for multi precision integers and rational numbers, and for multi precision floating point numbers.
 
 These libraries can be obtained from <A HREF="https://gmplib.org/">`https://gmplib.org/`</A>
 and <A HREF="https://www.mpfr.org/">`https://www.mpfr.org/`</A>.
 Since Visual \cpp is not properly supported by the \gmp and \mpfr projects,
 we provide precompiled versions of \gmp and \mpfr, which can be downloaded
 from the <a href="https://github.com/CGAL/cgal/releases">assets of a release</a>.
+Version supported are <b>GMP Version 5.0.1 or later, MPFR Version 3.0.0 or later</b>.
+
+The \boost library also provides a module for multi precision integers and rational numbers:
+<A HREF="https://www.boost.org/doc/libs/release/libs/multiprecision/doc/html/index.html">\boost multiprecision</A>.
+Versions supported are <b>\boost Version 1.72 or later</b>.
+
+The components \cgal, and `CGAL_Qt6` require either \gmp and \mpfr, or \boost multiprecision
+for multi precision numbers. `CGAL_Core` requires \boost multiprecision.
+
+\cgal combines floating point arithmetic with exact arithmetic
+in order to be efficient and reliable. \cgal has a built-in
+number type for that, but previous alternatives are faster
+solutions, and we recommend using one of them.
+
+The CMake variable `CGAL_CMAKE_EXACT_NT_BACKEND` can be used to select
+the library that will be used internally for multi precision number types.
 
 \section secoptional3rdpartysoftware Optional Third Party Libraries
 

Documentation/doc/Documentation/Usage.txt

@@ -36,7 +36,7 @@ Using \cgal requires a few core components to be previously installed:
 <li> a supported compiler (see Section \ref seccompilers),</li>
 <li> \ref seccmake,</li>
 <li> \ref thirdpartyBoost,</li>
-<li> \ref thirdpartyMPFR.</li>
+<li> a \ref thirdpartyMP.</li>
 </ul>
 
 Optional third-party software might be required to build examples and demos shipped with \cgal,

Documentation/doc/Documentation/windows.txt

@@ -6,7 +6,7 @@
 15.9, 16.0, 17.0 (\visualstudio 2017, 2019, and 2022).
 
 \cgal is a library that has mandatory dependencies that must be first installed:
-\ref thirdpartyBoost and \ref thirdpartyMPFR.
+\ref thirdpartyBoost and a \ref thirdpartyMP.
 
 You have two options to install \cgal and its dependencies: you can either use
 the *Vcpkg library manager*, which will automatically install an appropriate version of

Documentation/doc/biblio/geom.bib

@@ -92400,7 +92400,7 @@ some 2 curves cross exponentially many times."
 
 @inproceedings{kn-afrmt-97
 , author =      "Yoshiyuki Kusakari and Takao Nishizeki"
-, title =       "An Algorithm for Finding a Region with the Minimum Total {$L_1$}-Distance from Prescibed Terminals"
+, title =       "An Algorithm for Finding a Region with the Minimum Total {$L_1$}-Distance from Prescribed Terminals"
 , booktitle =   "Proc. 8th Annu. Internat. Sympos. Algorithms Comput."
 , nickname =    "ISAAC '97"
 , site =        "Singapore"

Generator/doc/Generator/CGAL/point_generators_2.h

@@ -30,7 +30,6 @@ are needed from `rnd` for each point.
 \sa `CGAL::points_on_segment_2()`
 \sa `CGAL::points_on_square_grid_2()`
 \sa `CGAL::random_selection()`
-\sa `CGAL::random_selection()`
 \sa `std::random_shuffle()`
 
 */

Generator/include/CGAL/Generator/internal/Generic_random_point_generator.h

@@ -105,7 +105,7 @@ void Generic_random_point_generator<Id, ObjectFromIdMap,  GeneratorOnObject, P>:
   );
 
   // generate the points
-  GeneratorOnObject pointCreator(object_from_id_map(ids[target]));
+  GeneratorOnObject pointCreator(object_from_id_map(ids[target]), random);
   this->d_item = *pointCreator;
 }
 

GraphicsView/include/CGAL/Qt/qglviewer.h

@@ -478,7 +478,6 @@ public:
   qreal bufferTextureMaxU() const { return bufferTextureMaxU_; }
   /*! Same as bufferTextureMaxU(), but for the v texture coordinate. */
   qreal bufferTextureMaxV() const { return bufferTextureMaxV_; }
-#if (QT_VERSION >= QT_VERSION_CHECK(5, 4, 0))
   // These methods are part of the QGLWidget public API.
   // As of version 2.7.0, the use of QOpenGLWidget instead means that they have
   // to be provided for backward compatibility.
@@ -486,7 +485,6 @@ public:
                   const QFont &font = QFont());
   void renderText(double x, double y, double z, const QString &str,
                   const QFont &font = QFont());
-#endif
 
 public Q_SLOTS:
   void copyBufferToTexture(GLint, GLenum = GL_NONE);

GraphicsView/include/CGAL/Qt/qglviewer_impl.h

@@ -354,7 +354,6 @@ camera is manipulated) : main drawing method. Should be overloaded. \arg
 postDraw() : display of visual hints (world axis, FPS...) */
 CGAL_INLINE_FUNCTION
 void CGAL::QGLViewer::paintGL() {
-  makeCurrent();
   // Clears screen, set model view matrix...
   preDraw();
   // Used defined method. Default calls draw()
@@ -364,7 +363,6 @@ void CGAL::QGLViewer::paintGL() {
     draw();
   // Add visual hints: axis, camera, grid...
   postDraw();
-  doneCurrent();
   Q_EMIT drawFinished(true);
 }
 
@@ -720,7 +718,6 @@ CGAL_INLINE_FUNCTION
 void CGAL::QGLViewer::drawLight(GLenum, qreal ) const {
 }
 
-#if (QT_VERSION >= QT_VERSION_CHECK(5, 4, 0))
 CGAL_INLINE_FUNCTION
 void CGAL::QGLViewer::renderText(int x, int y, const QString &str,
                            const QFont &font) {
@@ -742,7 +739,6 @@ void CGAL::QGLViewer::renderText(double x, double y, double z, const QString &st
   const Vec proj = camera_->projectedCoordinatesOf(Vec(x, y, z));
   renderText(int(proj.x), int(proj.y), str, font);
 }
-#endif
 
 /*! Draws \p text at position \p x, \p y (expressed in screen coordinates
 pixels, origin in the upper left corner of the widget).

Heat_method_3/include/CGAL/Heat_method_3/internal/Intrinsic_Delaunay_triangulation_3.h

@@ -25,7 +25,6 @@
 #include <CGAL/squared_distance_3.h>
 #include <CGAL/number_utils.h>
 #include <CGAL/Iterator_range.h>
-#include <CGAL/Iterator_range.h>
 #include <CGAL/boost/graph/helpers.h>
 #include <CGAL/boost/graph/copy_face_graph.h>
 #include <CGAL/Heat_method_3/internal/V2V.h>

Installation/.reuse/dep5

@@ -1,12 +0,0 @@
-Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Upstream-Name: CGAL
-Upstream-Contact: CGAL Editorial Board <info@cgal.org>
-Source: https://github.com/CGAL/cgal
-
-Files: *.cmake *.md doc/* doc_html/* scripts/* developer_scripts/* package_info/* demo/* examples/* src/* test/* benchmarks/* benchmark/* data/* cmake/*
-Copyright: 1995-2023 The CGAL Project
-License: CC0-1.0
-
-Files: include/CGAL/Qt/ImageInterface.ui include/CGAL/Qt/resources/qglviewer-icon.xpm AUTHORS CMakeLists.txt README auxiliary/cgal_create_cmake_script.1 auxiliary/gmp/README include/CGAL/license/gpl_package_list.txt auxiliary/cgal_app.icns copyright VERSION
-Copyright: 1995-2023 The CGAL Project
-License: CC0-1.0

Installation/CHANGES.md

@@ -13,6 +13,8 @@ Release date: June 2024
   - LLVM Clang version 15.0.7 or later (on Linux)
   - Apple Clang compiler versions 10.0.1, 12.0.5, and 15.0.0 (on macOS)
 - The minimal supported version of Boost is now 1.72.0.
+- GMP/MPFR are no longer mandatory to use CGAL, [Boost.Multiprecision](https://www.boost.org/doc/libs/1_72_0/libs/multiprecision/doc/html/index.html).
+  can be used instead.
 - The CGAL `Core` library is no longer based on GMP, but on
   [Boost.Multiprecision](https://www.boost.org/doc/libs/1_72_0/libs/multiprecision/doc/html/index.html).
   Either GMP backend or Boost backend can be used.
@@ -144,10 +146,6 @@ Release date: June 2024
     to the [`GenericMap`](https://doc.cgal.org/6.0/Combinatorial_map/classGenericMap.html)
     concept, which enables users to insert an edge between two different faces in order to create faces with holes.
 
--   Added new meshing criterion `edge_distance`, an upper bound for the distance from the edge to the 1D feature.
-- **Breaking change**: the concept `MeshEdgeCriteria_3` was modified to include the new meshing criterion `edge_distance`.
-
-
 ### [Quadtrees, Octrees, and Orthtrees](https://doc.cgal.org/6.0/Manual/packages.html#PkgOrthtree)
 
 - **Breaking change**:
@@ -225,6 +223,9 @@ Release date: June 2024
     as well as the class `Triangle_accessor`. These were no longer used for several releases.
 -   **Breaking change**: Removed the class templates `CGAL::Gray_image_mesh_domain_3`, `CGAL::Implicit_mesh_domain_3`,
     and `CGAL::Labeled_image_mesh_domain_3`, which were deprecated since CGAL-4.13.
+-   Added new meshing criterion `edge_distance`, an upper bound for the distance from the edge to the 1D feature.
+- **Breaking change**: the concept `MeshEdgeCriteria_3` was modified to include the new meshing criterion `edge_distance`.
+
 
 ### [3D Surface Mesh Generation](https://doc.cgal.org/6.0/Manual/packages.html#PkgSurfaceMesher3)
 

Installation/CMakeLists.txt

@@ -934,7 +934,7 @@ if(CGAL_BRANCH_BUILD)
     find_package(Doxygen REQUIRED)
     find_package(Eigen3 REQUIRED)
     find_package(Qt6 COMPONENTS Core Widgets OpenGL Gui REQUIRED)
-    find_package(VTK COMPONENTS vtkImagingGeneral vtkIOImage NO_MODULE)
+    find_package(VTK COMPONENTS ImagingGeneral IOImage NO_MODULE)
     if(VTK_FOUND)
       get_target_property(VTK_INCLUDE_DIRS VTK::IOImage INTERFACE_INCLUDE_DIRECTORIES)
     endif()

Installation/REUSE.toml

@@ -0,0 +1,47 @@
+version = 1
+SPDX-PackageName = "CGAL"
+SPDX-PackageSupplier = "CGAL Editorial Board <info@cgal.org>"
+SPDX-PackageDownloadLocation = "https://github.com/CGAL/cgal"
+
+[[annotations]]
+path = [
+        "**.cmake",
+        "**.md",
+        "doc/**",
+        "doc_html/**",
+        "scripts/**",
+        "developer_scripts/**",
+        "package_info/**",
+        "demo/**",
+        "examples/**",
+        "src/**",
+        "test/**",
+        "benchmarks/**",
+        "benchmark/**",
+        "data/**",
+        "cmake/**",
+        "**/*.natvis",
+]
+precedence = "aggregate"
+SPDX-FileCopyrightText = "1995-2024 The CGAL Project"
+SPDX-License-Identifier = "CC0-1.0"
+
+[[annotations]]
+path = [
+        "REUSE.toml",
+        "lib/cmake/CGAL/CGALConfig-installation-dirs.cmake.in",
+        "include/CGAL/Qt/ImageInterface.ui",
+        "include/CGAL/Qt/resources/qglviewer-icon.xpm",
+        "AUTHORS",
+        "CMakeLists.txt",
+        "README",
+        "auxiliary/cgal_create_cmake_script.1",
+        "auxiliary/gmp/README",
+        "include/CGAL/license/gpl_package_list.txt",
+        "auxiliary/cgal_app.icns",
+        "copyright",
+        "VERSION",
+]
+precedence = "aggregate"
+SPDX-FileCopyrightText = "1995-2024 The CGAL Project"
+SPDX-License-Identifier = "CC0-1.0"

Installation/cmake/modules/CGAL_OpenMesh_support.cmake

@@ -0,0 +1,17 @@
+
+if(OpenMesh_FOUND AND NOT TARGET CGAL::OpenMesh_support)
+
+  add_library(CGAL::OpenMesh_support INTERFACE IMPORTED)
+
+  if(TARGET OpenMeshCore)
+    target_link_libraries(CGAL::OpenMesh_support INTERFACE OpenMeshCore)
+  endif()
+
+  if(TARGET OpenMeshTools)
+    target_link_libraries(CGAL::OpenMesh_support INTERFACE OpenMeshTools)
+  endif()
+
+  target_compile_definitions(CGAL::OpenMesh_support
+    INTERFACE  "CGAL_USE_OPENMESH;NOMINMAX;_USE_MATH_DEFINES")
+
+endif()

Installation/cmake/modules/FindOpenMesh.cmake

@@ -1,79 +0,0 @@
-#This modules tries to find OpenMesh
-# Once done this will define
-#
-#  OpenMesh_FOUND - system has OpenMesh
-#  OPENMESH_INCLUDE_DIR - OpenMesh include directory
-#  OPENMESH_LIBRARIES - OpenMesh libraries
-#
-
-find_package(OpenMesh NO_MODULE QUIET)
-
-# Is it already configured?
-if (NOT OpenMesh_FOUND)
-
- find_path(OPENMESH_INCLUDE_DIR
-            NAMES OpenMesh/Core/Mesh/ArrayKernel.hh
-            HINTS ENV OPENMESH_INC_DIR
-                  ENV OPENMESH_DIR
-                  /usr/include
-                  /usr/local/include
-            PATH_SUFFIXES src
-            DOC "The directory containing the OpenMesh header files WITHOUT the OpenMesh prefix"
-           )
-
-  find_library(OPENMESH_LIBRARY_RELEASE NAMES "OpenMeshCore"
-               HINTS ENV OPENMESH_LIB_DIR
-                     ENV OPENMESH_DIR
-               PATH_SUFFIXES lib
-               DOC "Path to the OpenMeshCore library"
-              )
-
-  find_library(OPENMESH_LIBRARY_DEBUG NAMES "OpenMeshCored"
-               HINTS ENV OPENMESH_LIB_DIR
-                     ENV OPENMESH_DIR
-               PATH_SUFFIXES lib
-               DOC "Path to the OpenMeshCored library"
-              )
-
-  if(OPENMESH_LIBRARY_RELEASE)
-    if(OPENMESH_LIBRARY_DEBUG)
-      set(OPENMESH_LIBRARIES optimized ${OPENMESH_LIBRARY_RELEASE} debug ${OPENMESH_LIBRARY_DEBUG})
-    else()
-      set(OPENMESH_LIBRARIES ${OPENMESH_LIBRARY_RELEASE})
-    endif()
-  endif()
-endif()
-
-include( FindPackageHandleStandardArgs )
-
-find_package_handle_standard_args(OpenMesh
-  REQUIRED_VARS OPENMESH_INCLUDE_DIR OPENMESH_LIBRARIES
-  FOUND_VAR OpenMesh_FOUND
-  )
-
-if(OpenMesh_FOUND AND NOT TARGET OpenMesh::OpenMesh)
-  add_library(OpenMesh::OpenMesh UNKNOWN IMPORTED)
-
-  if(TARGET OpenMeshCore)
-    target_link_libraries(OpenMesh::OpenMesh INTERFACE OpenMeshCore)
-    return()
-  endif()
-
-  set_target_properties(OpenMesh::OpenMesh PROPERTIES
-    INTERFACE_COMPILE_DEFINITIONS "CGAL_USE_OPENMESH;NOMINMAX;_USE_MATH_DEFINES"
-    INTERFACE_INCLUDE_DIRECTORIES  "${OPENMESH_INCLUDE_DIR}")
-
-  if(OPENMESH_LIBRARY_RELEASE)
-    set_property(TARGET OpenMesh::OpenMesh APPEND PROPERTY
-      IMPORTED_CONFIGURATIONS RELEASE)
-    set_target_properties(OpenMesh::OpenMesh PROPERTIES
-      IMPORTED_LOCATION_RELEASE "${OPENMESH_LIBRARY_RELEASE}")
-  endif()
-
-  if(OPENMESH_LIBRARY_DEBUG)
-    set_property(TARGET OpenMesh::OpenMesh APPEND PROPERTY
-      IMPORTED_CONFIGURATIONS DEBUG)
-    set_target_properties(OpenMesh::OpenMesh PROPERTIES
-      IMPORTED_LOCATION_DEBUG "${OPENMESH_LIBRARY_DEBUG}")
-  endif()
-endif()

Installation/cmake/modules/UseOpenMesh.cmake

@@ -1,5 +0,0 @@
-# This module setups the compiler for using the OpenMesh library.
-# It assumes that find_package(OpenMesh) was already called.
-
-include_directories ( ${OPENMESH_INCLUDE_DIR} )
-add_definitions( -DNOMINMAX -D_USE_MATH_DEFINES  )

Intersections_3/include/CGAL/Intersections_3/internal/Line_3_Ray_3_do_intersect.h

@@ -38,11 +38,8 @@ do_intersect(const typename K::Line_3& l,
   if(p0p1s == COLLINEAR)
     return true;
 
-  CGAL::Orientation stp0 = pred(r.source(), r.second_point(), l.point(0));
-  if(stp0 == COLLINEAR)
-    return Ray_3_has_on_collinear_Point_3(r,l.point(0),k);
-
-  return (p0p1s != stp0);
+  typename K::Point_3 lst = l.point(0) + (r.point(1) - r.point(0));
+  return (pred(l.point(0), l.point(1), r.point(0), lst) != CGAL::POSITIVE);
 }
 
 template <class K>

Intersections_3/test/Intersections_3/test_intersections_Line_3.cpp

@@ -232,6 +232,10 @@ public:
     check_no_intersection(L(p(0,0,0),p(1,0,0)), R(p(3,0,1),p(6,0,1)));
     check_no_intersection(L(p(0,0,0),p(1,0,0)), R(p(0,2,0),p(0,4,0)));
     check_no_intersection(L(p(0,0,0),p(1,0,0)), R(p(6,2,0),p(5,4,0)));
+    check_no_intersection(L(p(0,0,0),p(0,1,0)), R(p(1,-1,0),p(1,0,0)));
+    check_no_intersection(L(p(0,-10,0),p(0,-9,0)), R(p(1,-1,0),p(2,0,0)));
+    check_no_intersection(L(p(0,-10,0),p(0,0,0)), R(p(1,-1,0),p(2,0,0)));
+    check_no_intersection(L(p(0,0,0),p(0,1,0)), R(p(1,-1,0),p(2,0,0)));
 
     // Point intersection
     check_intersection   (L(p(0,0,0),p(1,0,0)), R(p(3,0,0),p(6,4,0)),

Intersections_3/test/Intersections_3/test_intersections_Ray_3.cpp

@@ -74,6 +74,14 @@ public:
     check_no_intersection  (R(p(0,0,0), p(1,0,0)), R(p(0,1,0), p(0,2,0)));
     check_no_intersection  (R(p(0,0,0), p(1,0,0)), R(p(-1,0,0), p(-1,-1,0)));
 
+    check_no_intersection  (R(p(1,-1,0), p(2,0,0)), R(p(2,-1,0), p(3,0,0)));
+    check_no_intersection  (R(p(1,-1,0), p(2,0,0)), R(p(2,-1,0), p(3,-1,0)));
+    check_no_intersection  (R(p(1,-1,0), p(2,0,0)), R(p(2,-1,0), p(3,-2,0)));
+    check_no_intersection  (R(p(0,0,0), p(0,1,0)), R(p(0,-1,0), p(1,-1,0)));
+    check_no_intersection  (R(p(0,0,0), p(0,1,0)), R(p(-1,-3,0),p(2,0,0)));
+    check_no_intersection  (R(p(0,0,0), p(0,1,0)), R(p(-2,-4,0),p(-1,-3,0)));
+    check_no_intersection  (R(p(0,0,0), p(0,1,0)), R(p(1,-1,0), p(2,0,0)));
+
     // Point
     check_intersection     (R(p(0,0,0), p(1,0,0)), R(p(0,0,0), p(-1,0,0)),
                             p(0,0,0));
@@ -88,6 +96,10 @@ public:
     check_intersection     (R(p(0,0,0), p(1,0,0)), R(p(1,-2,0), p(1,-1,0)),
                             p(1,0,0));
 
+    check_intersection     (R(p(0,0,0), p(1,0,0)), R(p(1,-2,0), p(1,-1,0)),
+                            p(1,0,0));
+
+
     // Segment
     check_intersection     (R(p(0,0,0), p(1,0,0)), R(p(2,0,0), p(-3,0,0)),
                             S(p(0,0,0), p(2,0,0)), false);
@@ -161,6 +173,8 @@ public:
     for(int i=0; i<N; ++i)
     {
       P c = random_point(), q = random_point();
+      while(c==q)
+        q = random_point();
       Sph sph(c, CGAL::squared_distance(c, q));
 
       // single point

Kernel_23/test/Kernel_23/Dimension.cpp

@@ -9,7 +9,6 @@
 #include <CGAL/Exact_predicates_inexact_constructions_kernel.h>
 #include <CGAL/Exact_predicates_exact_constructions_kernel.h>
 
-#include <CGAL/Dimension.h>
 #include <CGAL/Dimension.h>
 
 template < typename K >

Lab/demo/Lab/CGAL_Lab.cpp

@@ -27,10 +27,8 @@ int& code_to_call_before_creation_of_QCoreApplication(int& i) {
   fmt.setOption(QSurfaceFormat::DebugContext);
   QSurfaceFormat::setDefaultFormat(fmt);
 
-  //for windows
-#if (QT_VERSION >= QT_VERSION_CHECK(5, 3, 0)) /// @TODO remove all calls to QT_VERSION_CHECK about Qt5
+  // for windows
   QCoreApplication::setAttribute(Qt::AA_UseDesktopOpenGL);
-#endif
 
   return i;
 }

Lab/demo/Lab/MainWindow.cpp

@@ -668,15 +668,7 @@ void MainWindow::loadPlugins()
     }
   }
   QString env_path = qgetenv("LAB_DEMO_PLUGINS_PATH");
-#if (QT_VERSION >= QT_VERSION_CHECK(5, 6, 0))
   QChar separator = QDir::listSeparator();
-#else
-#if defined(_WIN32)
-  QChar separator = ';';
-#else
-  QChar separator = ':';
-#endif
-#endif
   if(!env_path.isEmpty()) {
 #if defined(_WIN32)
     QString path = qgetenv("PATH");
@@ -2657,17 +2649,10 @@ void MainWindow::resetHeader()
   sceneView->header()->setSectionResizeMode(Scene::RenderingModeColumn, QHeaderView::ResizeToContents);
   sceneView->header()->setSectionResizeMode(Scene::ABColumn, QHeaderView::Fixed);
   sceneView->header()->setSectionResizeMode(Scene::VisibleColumn, QHeaderView::Fixed);
-#if QT_VERSION >= QT_VERSION_CHECK(5, 11, 0)
   sceneView->header()->resizeSection(Scene::ColorColumn, sceneView->header()->fontMetrics().horizontalAdvance("_#_"));
   sceneView->resizeColumnToContents(Scene::RenderingModeColumn);
   sceneView->header()->resizeSection(Scene::ABColumn, sceneView->header()->fontMetrics().horizontalAdvance(QString("_AB_")));
   sceneView->header()->resizeSection(Scene::VisibleColumn, sceneView->header()->fontMetrics().horizontalAdvance(QString("_View_")));
-#else
-  sceneView->header()->resizeSection(Scene::ColorColumn, sceneView->header()->fontMetrics().width("_#_"));
-  sceneView->resizeColumnToContents(Scene::RenderingModeColumn);
-  sceneView->header()->resizeSection(Scene::ABColumn, sceneView->header()->fontMetrics().width(QString("_AB_")));
-  sceneView->header()->resizeSection(Scene::VisibleColumn, sceneView->header()->fontMetrics().width(QString("_View_")));
-#endif
 }
 
 void MainWindow::reset_default_loaders()

Lab/demo/Lab/Plugins/IO/CMakeLists.txt

@@ -43,38 +43,23 @@ target_link_libraries(surf_io_plugin PUBLIC scene_surface_mesh_item)
 cgal_lab_plugin(lcc_io_plugin lcc_io_plugin KEYWORDS Viewer)
 target_link_libraries(lcc_io_plugin PUBLIC scene_lcc_item)
 
-find_package(VTK QUIET COMPONENTS vtkCommonCore vtkIOCore vtkIOLegacy vtkIOXML
-                                  vtkFiltersCore vtkFiltersSources)
+find_package(VTK 9.0 QUIET COMPONENTS CommonCore IOCore IOLegacy IOXML FiltersCore FiltersSources)
 set_package_properties(
   VTK PROPERTIES
   DESCRIPTION "A library for image processing."
-  PURPOSE "Can be used for I/O (DICOM, VTU, VTP.")
+  PURPOSE "Can be used for I/O (DICOM, VTU, VTP).")
 
 cgal_lab_plugin(triangulation_3_io_plugin triangulation_3_io_plugin KEYWORDS Viewer)
 target_link_libraries(triangulation_3_io_plugin PUBLIC scene_triangulation_3_item)
 
-if(VTK_FOUND)
-  if(VTK_USE_FILE)
-    include(${VTK_USE_FILE})
-  endif()
-  if("${VTK_VERSION_MAJOR}" GREATER "5" OR VTK_VERSION VERSION_GREATER 5)
-    if(TARGET VTK::CommonCore)
-      set(VTK_LIBRARIES VTK::CommonCore VTK::IOCore VTK::IOLegacy VTK::IOXML
-                        VTK::FiltersCore VTK::FiltersSources)
-    endif()
-    if(VTK_LIBRARIES)
-      cgal_lab_plugin(vtk_plugin VTK_io_plugin KEYWORDS Viewer Mesh_3)
-      target_link_libraries(vtk_plugin PUBLIC scene_surface_mesh_item scene_polylines_item scene_c3t3_item scene_points_with_normal_item
-                                       ${VTK_LIBRARIES})
-      target_compile_definitions(vtk_plugin  PRIVATE -DCGAL_USE_VTK -DNOMINMAX)
-    else()
-      message(STATUS "NOTICE: the vtk IO plugin needs VTK libraries and will not be compiled.")
-    endif()
-  else()
-    message(STATUS "NOTICE: the vtk IO plugin needs VTK 6.0 or greater and will not be compiled (incorrect version found).")
-  endif()
+if(VTK_FOUND AND VTK_LIBRARIES)
+  message(STATUS "VTK ${VTK_VERSION} found ${VTK_LIBRARIES}")
+  cgal_lab_plugin(vtk_plugin VTK_io_plugin KEYWORDS Viewer Mesh_3)
+  target_link_libraries(vtk_plugin PUBLIC scene_surface_mesh_item scene_polylines_item scene_c3t3_item scene_points_with_normal_item
+                                    ${VTK_LIBRARIES})
+  target_compile_definitions(vtk_plugin  PRIVATE -DCGAL_USE_VTK -DNOMINMAX)
 else()
-  message(STATUS "NOTICE: the vtk IO plugin needs VTK 6.0 or greater and will not be compiled.")
+  message(STATUS "NOTICE: the vtk IO plugin needs VTK 9.0 or greater and will not be compiled.")
 endif()
 cgal_lab_plugin(xyz_plugin XYZ_io_plugin KEYWORDS Viewer PointSetProcessing Classification)
 target_link_libraries(xyz_plugin PUBLIC scene_points_with_normal_item)

Lab/demo/Lab/Plugins/Mesh_3/CMakeLists.txt

@@ -37,21 +37,9 @@ if(ITK_FOUND)
   target_link_libraries(mesh_3_plugin PUBLIC CGAL::ITK_support)
 endif(ITK_FOUND)
 
-find_package(VTK QUIET COMPONENTS vtkImagingGeneral vtkIOImage vtkIOXML NO_MODULE)
-if(VTK_FOUND)
-  if(VTK_USE_FILE)
-    include(${VTK_USE_FILE})
-  endif()
-  if("${VTK_VERSION_MAJOR}" GREATER "5" OR VTK_VERSION VERSION_GREATER 5)
-    if(TARGET VTK::IOImage)
-      set(VTK_LIBRARIES VTK::IOImage VTK::ImagingGeneral VTK::IOXML)
-    endif()
-    if(NOT VTK_LIBRARIES)
-      message(STATUS "NOTICE: DICOM files (.dcm) require the VTK libraries, and will not be readable.")
-    endif()
-  else()
-    message(STATUS "NOTICE: DICOM files (.dcm) require the VTK libraries, and will not be readable.")
-  endif()
+find_package(VTK 9.0 QUIET COMPONENTS ImagingGeneral IOImage IOXML NO_MODULE)
+if(VTK_FOUND AND VTK_LIBRARIES)
+  message(STATUS "VTK ${VTK_VERSION} found ${VTK_LIBRARIES}")
 else()
   message(STATUS "NOTICE: DICOM files (.dcm) require the VTK libraries, and will not be readable.")
 endif()

Lab/demo/Lab/Plugins/Mesh_3/Io_image_plugin.cpp

@@ -705,11 +705,7 @@ private:
 
       // Find the right width for the label to accommodate at least 9999
       QFontMetrics metric = x_cubeLabel->fontMetrics();
-#if QT_VERSION >= QT_VERSION_CHECK(5, 11, 0)
       x_cubeLabel->setFixedWidth(metric.horizontalAdvance(QString(".9999.")));
-#else
-      x_cubeLabel->setFixedWidth(metric.width(QString(".9999.")));
-#endif
       x_cubeLabel->setText("0");
       x_cubeLabel->setValidator(validator);
 
@@ -735,11 +731,7 @@ private:
 
       // Find the right width for the label to accommodate at least 9999
       QFontMetrics metric = y_cubeLabel->fontMetrics();
-#if QT_VERSION >= QT_VERSION_CHECK(5, 11, 0)
       y_cubeLabel->setFixedWidth(metric.horizontalAdvance(QString(".9999.")));
-#else
-      y_cubeLabel->setFixedWidth(metric.width(QString(".9999.")));
-#endif
       y_cubeLabel->setText("0");
       y_cubeLabel->setValidator(validator);
       y_slider = new QSlider(mw);
@@ -764,11 +756,7 @@ private:
 
       // Find the right width for the label to accommodate at least 9999
       QFontMetrics metric = z_cubeLabel->fontMetrics();
-#if QT_VERSION >= QT_VERSION_CHECK(5, 11, 0)
       z_cubeLabel->setFixedWidth(metric.horizontalAdvance(QString(".9999.")));
-#else
-      z_cubeLabel->setFixedWidth(metric.width(QString(".9999.")));
-#endif
       z_cubeLabel->setText("0");
       z_cubeLabel->setValidator(validator);
       z_slider = new QSlider(mw);

Lab/demo/Lab/Plugins/Mesh_3/Mesh_3_plugin.cpp

@@ -750,7 +750,9 @@ void Mesh_3_plugin::mesh_3(const Mesh_type mesh_type,
       }
     }
 
-    if(mesh_type != Mesh_type::SURFACE_ONLY && !material_ids_valid)
+    if(mesh_type != Mesh_type::SURFACE_ONLY
+      && !material_ids_valid
+      && bounding_sm_item != nullptr)
     {
       sm_items.removeAll(make_not_null(bounding_sm_item));
     }

Lab/demo/Lab/Plugins/Mesh_3/Mesh_function.h

@@ -171,8 +171,10 @@ log() const
              .arg(detect_connected_components);
     res << QString("use weights: %1").arg(weights_ptr != nullptr);
   }
-  res << QString("use aabb tree: %1").arg(use_sizing_field_with_aabb_tree);
-  res << QString("manifold: %1").arg(manifold);
+  if(use_sizing_field_with_aabb_tree)
+    res << QString("use sizing field with aabb tree: %1").arg(use_sizing_field_with_aabb_tree);
+  if(manifold)
+    res << QString("manifold: %1").arg(manifold);
 
   return res;
 }

Lab/demo/Lab/Plugins/PMP/Engrave_text_plugin.cpp

@@ -250,11 +250,7 @@ protected:
     }
     case QEvent::Wheel: {
       QWheelEvent* event = static_cast<QWheelEvent*>(ev);
-#if QT_VERSION < QT_VERSION_CHECK(5, 14, 0)
-      QPoint pos = event->pos();
-#else
       QPointF pos = event->position();
-#endif
       QPointF old_pos = v->mapToScene(pos.x(), pos.y());
       if(event->angleDelta().y() <0)
         v->scale(1.2, 1.2);

Lab/demo/Lab/Plugins/PMP/Interpolated_corrected_principal_curvatures_plugin.cpp

@@ -59,7 +59,6 @@ void compute(SMesh* sMesh,
   namespace PMP = CGAL::Polygon_mesh_processing;
   typedef CGAL::Exact_predicates_inexact_constructions_kernel Epic_kernel;
   typedef Epic_kernel::Point_3 Point;
-  typedef Epic_kernel::Point_3 Point;
   typedef Epic_kernel::Vector_3 Vector;
   typedef boost::graph_traits<SMesh>::vertex_descriptor Vertex_descriptor;
 

Lab/demo/Lab/Plugins/Surface_mesh/Parameterization_plugin.cpp

@@ -142,11 +142,7 @@ protected:
     }
     case QEvent::Wheel: {
       QWheelEvent* event = static_cast<QWheelEvent*>(ev);
-#if QT_VERSION < QT_VERSION_CHECK(5, 14, 0)
-      QPoint pos = event->pos();
-#else
       QPointF pos = event->position();
-#endif
       QPointF old_pos = v->mapToScene(pos.x(), pos.y());
       if(event->angleDelta().y() <0)
         v->scale(1.2, 1.2);

Lab/demo/Lab/Scene_textured_surface_mesh_item.cpp

@@ -74,7 +74,7 @@ Scene_textured_surface_mesh_item_priv::compute_normals_and_vertices(void) const
   faces_buffer.resize(0);
 
   typedef boost::graph_traits<SMesh>::face_iterator face_iterator;
-  typedef boost::graph_traits<SMesh>::face_iterator face_iterator;
+
   const CGAL::qglviewer::Vec offset = static_cast<CGAL::Three::Viewer_interface*>(CGAL::QGLViewer::QGLViewerPool().first())->offset();
 
   //Faces

Lab/demo/Lab/Viewer.cpp

@@ -1152,13 +1152,7 @@ void Viewer::drawVisualHints()
     //Prints the displayMessage
     QFont font = QFont();
     QFontMetrics fm(font);
-    TextItem *message_text = new TextItem(float(10 +
-                                            #if QT_VERSION >= QT_VERSION_CHECK(5, 11, 0)
-                                                   fm.horizontalAdvance(d->message)/2)
-                                            #else
-                                                   fm.width(d->message)/2)
-                                            #endif
-                                          ,
+    TextItem *message_text = new TextItem(float(10 + fm.horizontalAdvance(d->message)/2),
                                           float(height()-20),
                                           0, d->message, false,
                                           QFont(), Qt::gray );

Linear_cell_complex/benchmark/Linear_cell_complex_2/CMakeLists.txt

@@ -18,10 +18,8 @@ include_directories(BEFORE "/usr/include/libxml2/")
 # add_definitions("-g")
 
 # OpenMesh
-set(OPENMESH_DIR "${CMAKE_CURRENT_SOURCE_DIR}/openmesh")
 find_package(OpenMesh REQUIRED)
-include_directories(${OPENMESH_INCLUDE_DIR})
-link_directories(${OPENMESH_LIBRARY_DIR})
+include(CGAL_OpenMesh_support)
 
 # Polyhedron
 add_executable(polyhedron_performance performance_2.h polyhedron_performance.h
@@ -42,7 +40,7 @@ target_link_libraries(surface_mesh_performance surface_mesh)
 # Open_mesh
 add_executable(openmesh_performance performance_2.h openmesh_performance.h
                                     openmesh_performance.cpp)
-target_link_libraries(openmesh_performance ${OPENMESH_LIBRARIES})
+target_link_libraries(openmesh_performance CGAL::OpenMesh_support)
 
 # CGoGN
 find_package(Qt REQUIRED)
@@ -91,4 +89,4 @@ target_link_libraries(
   Zinri
   z
   ${QT_LIBRARIES}
-  ${OPENMESH_LIBRARIES})
+  CGAL::OpenMesh_support)

Linear_cell_complex/benchmark/Linear_cell_complex_2/cmake/FindOpenMesh.cmake

@@ -1,40 +0,0 @@
-# Find OpenMesh. If found, this will define
-#
-# OPENMESH_FOUND       - Successfully found OpenMesh
-# OPENMESH_INCLUDE_DIR - OpenMesh include directory
-# OPENMESH_LIBRARIES   - OpenMesh libraries
-# OPENMESH_LIBRARY_DIR - OpenMesh library directory
-#
-
-if(DEFINED OPENMESH_INCLUDE_DIR)
-  set(OPENMESH_FIND_QUIETLY TRUE)
-else()
-
-  find_path(OPENMESH_INCLUDE_DIR OpenMesh/Core/Mesh/PolyMeshT.hh
-    PATHS
-    /usr/local/include
-    /usr/include
-    $ENV{OPENMESH_DIR}/include
-    ${OPENMESH_DIR}/include
-    )
-
-  if(DEFINED OPENMESH_INCLUDE_DIR)
-
-    message(STATUS "Found OpenMesh: " ${OPENMESH_INCLUDE_DIR})
-    set(OPENMESH_FOUND true)
-
-    if(WIN32)
-      set(OPENMESH_LIBRARY_DIR "${OPENMESH_INCLUDE_DIR}/../lib"
-        CACHE PATH "OpenMesh library directory")
-    else()
-      set(OPENMESH_LIBRARY_DIR "${OPENMESH_INCLUDE_DIR}/../lib/OpenMesh"
-        CACHE PATH "OpenMesh library directory")
-    endif()
-
-    set(OPENMESH_LIBRARIES "OpenMeshCore;OpenMeshTools"
-      CACHE STRING "OpenMesh libraries")
-
-  else()
-    set(OPENMESH_FOUND FALSE)
-  endif()
-endif()

Maintenance/infrastructure/cgal.geometryfactory.com/bin/cgal_release.py

@@ -19,7 +19,7 @@ class Release:
         """return the command to create and publish the release"""
         return (
             f"PATH=/home/lrineau/bin-cmake3:/bin:/usr/bin:/home/lrineau/bin; cd {self.cwd} &&"
-            + " /usr/bin/time scl enable rh-git29 -- "
+            + " /usr/bin/time -v bash -x "
             + f"$HOME/bin/create_release {self.repo}{self.extra_options} --do-it"
         )
 

Maintenance/infrastructure/cgal.geometryfactory.com/bin/create_internal_release_of_the_day.py

@@ -13,8 +13,8 @@ from cgal_release import release, integration, master, beta_release, master, bet
 # Define a dictionary that maps day of the week to an action
 actions = {
     "Monday": integration,
-    "Tuesday": integration,
-    "Wednesday": integration,
+    "Tuesday": release("5.5"), #integration,
+    "Wednesday": release("5.6"), #integration,
     "Thursday": integration,
     "Friday": release("5.5"),
     "Saturday": release("5.6"),

Maintenance/infrastructure/cgal.geometryfactory.com/crontab

@@ -11,6 +11,8 @@
 
 PATH=/home/lrineau/bin-cmake3:/bin:/usr/bin:/home/lrineau/bin
 LC_CTYPE=en_US.UTF-8
+DOCKER_HOST=unix:///run/podman/podman.sock
+CONTAINER_HOST=unix:///run/podman/podman.sock
 
 # Update testsuite result pages
 5,15,25,35,45,55 * * * *  cd $HOME/CGAL/collect_and_public_testresults; ./treat_result_collection || echo ERROR
@@ -61,7 +63,7 @@ LC_CTYPE=en_US.UTF-8
 # Launch our  Docker testsuite , at 21:36,
 # after a pull of all new images at 20:23.
 06 20 * * * for i in $(cat /home/lrineau/.config/CGAL/test_cgal_docker_images); do docker pull $i; done; docker rmi $(docker images | awk '/<none>/ {print $3}')
-36 21 * * * cd /home/lrineau/Git/cgal-testsuite-dockerfiles && /usr/bin/time ./test_cgal.py --use-fedora-selinux-policy --force-rm --max-cpus 12 --container-cpus 4 --jobs 5 --upload-results --images $($HOME/bin/docker_images_to_test_today)
+36 21 * * * cd /home/lrineau/Git/cgal-testsuite-dockerfiles && /usr/bin/time ./test_cgal.py --use-fedora-selinux-policy --force-rm --max-cpus 20 --container-cpus 8 --jobs 10 --upload-results --images $($HOME/bin/docker_images_to_test_today)
 
 
 # Dump the crontab to SVN every hour at minute 18
@@ -71,10 +73,10 @@ LC_CTYPE=en_US.UTF-8
 #0 * * * * docker inspect --format='{{json .State.Health.Status}}' cgal-mediawiki-docker_wiki_1 | grep -q '"healthy"' || docker logs cgal-mediawiki-docker_wiki_1
 
 # cgal->cgal2 with git-multimail
-*/5 * * * * cd $HOME/Git/cgal-dev-pusher.git      && $HOME/bin/git-fetch-and-push-to-multimail cgal-dev         cgal-dev-receiver
-*/5 * * * * cd $HOME/Git/cgal-pusher.git          && $HOME/bin/git-fetch-and-push-to-multimail cgal             cgal-receiver
-*/5 * * * * cd $HOME/Git/cgal-students-pusher.git && $HOME/bin/git-fetch-and-push-to-multimail cgal-public-dev  cgal-students-receiver
-*/5 * * * * cd $HOME/Git/cgal-web-pusher.git      && $HOME/bin/git-fetch-and-push-to-multimail cgal-web         cgal-web-receiver
+#*/5 * * * * cd $HOME/Git/cgal-dev-pusher.git      && $HOME/bin/git-fetch-and-push-to-multimail cgal-dev         cgal-dev-receiver
+#*/5 * * * * cd $HOME/Git/cgal-pusher.git          && $HOME/bin/git-fetch-and-push-to-multimail cgal             cgal-receiver
+#*/5 * * * * cd $HOME/Git/cgal-students-pusher.git && $HOME/bin/git-fetch-and-push-to-multimail cgal-public-dev  cgal-students-receiver
+#*/5 * * * * cd $HOME/Git/cgal-web-pusher.git      && $HOME/bin/git-fetch-and-push-to-multimail cgal-web         cgal-web-receiver
 
 ####################################
 #             Old stuff

Maintenance/test_handling/create_testresult_page

@@ -103,13 +103,13 @@ sub write_select()
   print OUTPUTV '<option disabled selected value="">(select a release)', "</option>\n";
   my %results;
   foreach $_ (glob("results-*.shtml")) {
-      my $ctime = (stat($_))[10];
-      $results{$_} = $ctime;
+      my $mtime = (stat($_))[9];
+      $results{$_} = $mtime;
   }
   foreach $_ (sort { $results{$b} <=> $results{$a} } keys %results) {
       $_ =~ /results-${pattern}(\.\d+)?(-.*|)\.shtml/ || next;
-      my $ctime = (stat($_))[10];
-      my $date = time2str('%a %Y/%m/%d', $ctime);
+      my $mtime = (stat($_))[9];
+      my $date = time2str('%a %Y/%m/%d', $mtime);
      print OUTPUTV '<option value="', $_, '">';
      ($filename) = m/results-(.*?)\.shtml\s*/;
 #     printf OUTPUTV "%-20s (last modified: %s)</option>\n", $filename, $date;

Maintenance/test_handling/to_zipped_format

@@ -117,7 +117,7 @@ sub reformat_results($)
 #	if (/BOOST_BIMAP_VERSION = '([^']+)'/) {
 #	    $BOOST="$BOOST+bimap";
 #	}
-	if (/USING +CXXFLAGS = '([^']*)'/) {
+	if (/USING +CXXFLAGS = '([^']*)'/ && !$CXXFLAGS) {
 	    $CXXFLAGS="$CXXFLAGS $1";
 	}
 	if (/USING +LDFLAGS = '([^']*)'/) {

Mesh_2/test/Mesh_2/test_meshing.cpp

@@ -10,7 +10,6 @@
 #include <CGAL/Delaunay_mesher_2.h>
 #include <CGAL/Delaunay_mesh_face_base_2.h>
 #include <CGAL/Delaunay_mesh_size_criteria_2.h>
-#include <CGAL/Delaunay_mesh_size_criteria_2.h>
 #include <CGAL/Delaunay_mesher_no_edge_refinement_2.h>
 
 #include <CGAL/IO/File_poly.h>

Mesh_3/examples/Mesh_3/CMakeLists.txt

@@ -26,19 +26,11 @@ if(NOT TARGET CGAL::Eigen3_support)
   return()
 endif()
 
-find_package(VTK QUIET COMPONENTS vtkImagingGeneral vtkIOImage NO_MODULE)
+find_package(VTK 9.0
+             COMPONENTS ImagingGeneral IOImage
+             QUIET)
 if(VTK_FOUND)
-  if(VTK_USE_FILE)
-    include(${VTK_USE_FILE})
-  endif()
-  if("${VTK_VERSION_MAJOR}" GREATER "5" OR VTK_VERSION VERSION_GREATER 5)
-    message(STATUS "VTK found")
-    if(TARGET VTK::IOImage)
-      set(VTK_LIBRARIES VTK::ImagingGeneral VTK::IOImage)
-    endif()
-  else()
-    message(STATUS "VTK version 6.0 or greater is required")
-  endif()
+  message(STATUS "VTK ${VTK_VERSION} found ${VTK_LIBRARIES}")
 else()
   message(STATUS "VTK was not found")
 endif()
@@ -123,13 +115,12 @@ create_single_source_cgal_program("mesh_polyhedral_complex_sm.cpp")
 target_link_libraries(mesh_polyhedral_complex_sm PUBLIC CGAL::Eigen3_support)
 
 if(TARGET CGAL::CGAL_ImageIO)
-  if(VTK_FOUND AND ("${VTK_VERSION_MAJOR}" GREATER "5" OR VTK_VERSION
-                                                          VERSION_GREATER 5))
+  if(VTK_FOUND)
     create_single_source_cgal_program("mesh_3D_gray_vtk_image.cpp")
-    target_link_libraries(
-      mesh_3D_gray_vtk_image
-      PUBLIC CGAL::Eigen3_support CGAL::CGAL CGAL::CGAL_ImageIO ${VTK_LIBRARIES})
-    cgal_add_test(mesh_3D_gray_vtk_image)
+    target_link_libraries(mesh_3D_gray_vtk_image
+                          PUBLIC CGAL::Eigen3_support
+                                 CGAL::CGAL_ImageIO
+                          PRIVATE ${VTK_LIBRARIES})
     add_to_cached_list(CGAL_EXECUTABLE_TARGETS mesh_3D_gray_vtk_image)
   endif()
 

Mesh_3/include/CGAL/Mesh_3/Protect_edges_sizing_field.h

@@ -152,7 +152,7 @@ public:
   Protect_edges_sizing_field(C3T3& c3t3,
                              const MeshDomain& domain,
                              SizingFunction size=SizingFunction(),
-                             const FT minimal_size = FT(-1),
+                             const FT minimal_size = FT(0),
                              const Distance_Function edge_distance = Distance_Function(),
                              const std::size_t maximal_number_of_vertices = 0,
                              Mesh_error_code* error_code = 0
@@ -273,8 +273,7 @@ private:
 
   /// Returns `true` if the edge `(va,vb)` is a not good enough approximation
   /// of its feature.
-  bool approx_is_too_large(const Vertex_handle& va,
-                           const Vertex_handle& vb,
+  bool approx_is_too_large(const Edge& e,
                            const bool is_edge_in_complex) const;
 
   /// Returns `true` if the balls of `va` and `vb` intersect.
@@ -458,10 +457,12 @@ private:
       dim = -1 - dim;
 
     const FT s = field(p, dim, index);
-    if(s <= FT(0)) {
+    if(s < minimal_size_)
+    {
       std::stringstream msg;
       msg.precision(17);
-      msg << "Error: the field is null at ";
+      msg << "Error: the field is smaller than minimal size ("
+        << minimal_size_ << ") at ";
       if(dim == 0) msg << "corner (";
       else msg << "point (";
       msg << p << ")";
@@ -493,7 +494,7 @@ private:
 
   bool use_minimal_size() const
   {
-    return minimal_size_ != FT(-1);
+    return minimal_size_ != FT(0);
   }
   Weight minimal_weight() const
   {
@@ -645,7 +646,10 @@ insert_corners()
 #endif
 
     // Get weight (the ball radius is given by the 'query_size' function)
-    FT w = CGAL::square(query_size(p, 0, p_index));
+    const FT query_weight = CGAL::square(query_size(p, 0, p_index));
+    FT w = use_minimal_size()
+         ? (std::min)(minimal_weight_, query_weight)
+         : query_weight;
 
 #if CGAL_MESH_3_PROTECTION_DEBUG & 1
       std::cerr << "Weight from sizing field: " << w << std::endl;
@@ -716,7 +720,10 @@ insert_point(const Bare_point& p, const Weight& w, int dim, const Index& index,
   typename GT::Construct_weighted_point_3 cwp =
     c3t3_.triangulation().geom_traits().construct_weighted_point_3_object();
 
-  const Weighted_point wp = cwp(p,w*weight_modifier);
+  const FT wwm = use_minimal_size()
+               ? (std::max)(w * weight_modifier, minimal_weight())
+               : w * weight_modifier;
+  const Weighted_point wp = cwp(p, wwm);
 
   typename Tr::Locate_type lt;
   int li, lj;
@@ -734,7 +741,7 @@ insert_point(const Bare_point& p, const Weight& w, int dim, const Index& index,
     std::cerr << "SPECIAL ";
   std::cerr << "protecting ball ";
   if(v == Vertex_handle())
-    std::cerr << cwp(p,w*weight_modifier);
+    std::cerr << cwp(p, wwm);
   else
     std::cerr << disp_vert(v);
 
@@ -860,13 +867,11 @@ smart_insert_point(const Bare_point& p, Weight w, int dim, const Index& index,
                       std::back_inserter(cells_in_conflicts),
                       CGAL::Emptyset_iterator());
 
-    for(typename std::vector<Cell_handle>::const_iterator
-          it = cells_in_conflicts.begin(),
-        end = cells_in_conflicts.end(); it != end; ++it)
+    for(Cell_handle cit : cells_in_conflicts)
     {
       for(int i=0, d=tr.dimension(); i<=d; ++i)
       {
-        const Vertex_handle v = (*it)->vertex(i);
+        const Vertex_handle v = cit->vertex(i);
         if(c3t3_.triangulation().is_infinite(v))
           continue;
         if(!vertices_in_conflict_zone_set.insert(v).second)
@@ -1023,21 +1028,20 @@ insert_balls_on_edges()
   domain_.get_curves(std::back_inserter(input_features));
 
   // Iterate on edges
-  for ( typename Input_features::iterator fit = input_features.begin(),
-       end = input_features.end() ; fit != end ; ++fit )
+  for (const Feature_tuple& ft : input_features)
   {
     if(forced_stop()) break;
-    const Curve_index& curve_index = std::get<0>(*fit);
+    const Curve_index& curve_index = std::get<0>(ft);
     if ( ! is_treated(curve_index) )
     {
 #if CGAL_MESH_3_PROTECTION_DEBUG & 1
       std::cerr << "\n** treat curve #" << curve_index << std::endl;
 #endif
-      const Bare_point& p = std::get<1>(*fit).first;
-      const Bare_point& q = std::get<2>(*fit).first;
+      const Bare_point& p = std::get<1>(ft).first;
+      const Bare_point& q = std::get<2>(ft).first;
 
-      const Index& p_index = std::get<1>(*fit).second;
-      const Index& q_index = std::get<2>(*fit).second;
+      const Index& p_index = std::get<1>(ft).second;
+      const Index& q_index = std::get<2>(ft).second;
 
       Vertex_handle vp,vq;
       if ( ! domain_.is_loop(curve_index) )
@@ -1178,12 +1182,12 @@ insert_balls(const Vertex_handle& vp,
   const Weighted_point& vp_wp = c3t3_.triangulation().point(vp);
 
 #if ! defined(CGAL_NO_PRECONDITIONS)
-  if(sp <= 0) {
-    std::stringstream msg;;
+  if(sp < minimal_size_) {
+    std::stringstream msg;
     msg.precision(17);
-    msg << "Error: the mesh sizing field is null at point (";
-    msg << cp(vp_wp) << ")!";
-    CGAL_precondition_msg(sp > 0, msg.str().c_str());
+    msg << "Error: the mesh sizing field is smaller than minimal size ";
+    msg << " at point (" << cp(vp_wp) << ")!";
+    CGAL_precondition_msg(sp > minimal_size_, msg.str().c_str());
   }
 #endif // ! CGAL_NO_PRECONDITIONS
 
@@ -1428,7 +1432,7 @@ refine_balls()
       if( // topology condition
           non_adjacent_but_intersect(va, vb, is_edge_in_complex)
           // approximation condition
-       || (use_distance_field() && approx_is_too_large(va, vb, is_edge_in_complex)))
+       || (use_distance_field() && approx_is_too_large(*eit, is_edge_in_complex)))
       {
         using CGAL::Mesh_3::internal::distance_divisor;
 
@@ -1480,14 +1484,11 @@ refine_balls()
     new_sizes.clear();
 
     // Update size of balls
-    for ( typename std::vector<std::pair<Vertex_handle,FT> >::iterator
-          it = new_sizes_copy.begin(),
-          end = new_sizes_copy.end();
-          it != end ; ++it )
+    for (const std::pair<Vertex_handle,FT>& it : new_sizes_copy)
     {
       if(forced_stop()) break;
-      const Vertex_handle v = it->first;
-      const FT new_size = it->second;
+      const Vertex_handle v = it.first;
+      const FT new_size = it.second;
       // Set size of the ball to new value
       if(use_minimal_size() && new_size < minimal_size_) {
         if(!is_special(v)) {
@@ -1557,34 +1558,27 @@ do_balls_intersect(const Vertex_handle& va, const Vertex_handle& vb) const
 template <typename C3T3, typename MD, typename Sf, typename Df>
 bool
 Protect_edges_sizing_field<C3T3, MD, Sf, Df>::
-approx_is_too_large(const Vertex_handle& va, const Vertex_handle& vb, const bool is_edge_in_complex) const
+approx_is_too_large(const Edge& e, const bool is_edge_in_complex) const
 {
   if ( ! is_edge_in_complex )
-  {
     return false;
-  }
-  typedef typename Kernel::Point_3 Point_3;
 
-  Curve_index curve_index = domain_.curve_index((va->in_dimension() < vb->in_dimension()) ? vb->index() : va->index());
+  const Bare_point& pa = e.first->vertex(e.second)->point().point();
+  const Bare_point& pb = e.first->vertex(e.third)->point().point();
 
-  const Point_3& pa = va->point().point();
-  const Point_3& pb = vb->point().point();
-  const Point_3& segment_middle = CGAL::midpoint(pa, pb);
-  // Obtain the geodesic middle point
-  FT signed_geodesic_distance = domain_.signed_geodesic_distance(pa, pb, curve_index);
-  Point_3 geodesic_middle;
-  if (signed_geodesic_distance >= FT(0))
-  {
-    geodesic_middle = domain_.construct_point_on_curve(pa, curve_index, signed_geodesic_distance / 2);
-  }
-  else
-  {
-    geodesic_middle = domain_.construct_point_on_curve(pb, curve_index, -signed_geodesic_distance / 2);
-  }
-  // Compare distance to the parameter's distance
-  FT squared_evaluated_distance = CGAL::squared_distance(segment_middle, geodesic_middle);
-  FT segment_middle_edge_distance = query_distance(segment_middle, 1, curve_index);
-  return squared_evaluated_distance > CGAL::square(segment_middle_edge_distance);
+  // Construct the geodesic middle point
+  const Curve_index curve_index = c3t3_.curve_index(e);
+  const FT signed_geodesic_distance = domain_.signed_geodesic_distance(pa, pb, curve_index);
+  const Bare_point geodesic_middle = (signed_geodesic_distance >= FT(0))
+      ? domain_.construct_point_on_curve(pa, curve_index, signed_geodesic_distance / 2)
+      : domain_.construct_point_on_curve(pb, curve_index, -signed_geodesic_distance / 2);
+
+  const Bare_point edge_middle = CGAL::midpoint(pa, pb);
+  const FT squared_evaluated_distance = CGAL::squared_distance(edge_middle, geodesic_middle);
+
+  // Compare distance to the distance field from criteria
+  const FT max_distance_to_curve = query_distance(edge_middle, 1, curve_index);
+  return squared_evaluated_distance > CGAL::square(max_distance_to_curve);
 }
 
 template <typename C3T3, typename MD, typename Sf, typename Df>

Mesh_3/include/CGAL/Mesh_domain_with_polyline_features_3.h

@@ -252,8 +252,8 @@ public:
         : (- negative_distance);
     } else {
       return (pit <= qit)
-        ?     curve_segment_length(p, q, CGAL::POSITIVE)
-        : ( - curve_segment_length(p, q, CGAL::NEGATIVE) );
+        ?     curve_segment_length(p, q, CGAL::POSITIVE, pit, qit)
+        : ( - curve_segment_length(p, q, CGAL::NEGATIVE, pit, qit) );
     }
   }
 

Mesh_3/include/CGAL/Mesh_edge_criteria_3.h

@@ -177,7 +177,13 @@ public:
 
   /// Returns size of tuple (p,dim,index)
   FT sizing_field(const Point_3& p, const int dim, const Index& index) const
-  { return (*p_size_)(p,dim,index); }
+  {
+    const FT s = (*p_size_)(p, dim, index);
+    if (min_length_bound_ == FT(0))
+      return s;
+    else
+      return (std::max)(s, min_length_bound_);
+  }
 
   FT distance_field(const Point_3& p, const int dim, const Index& index) const
   {

Nef_3/include/CGAL/Nef_polyhedron_3.h

@@ -901,10 +901,11 @@ protected:
 
       Unique_hash_map<Vertex_const_handle, bool>& omit_vertex;
       int nov, nof;
+      bool hh;
 
     public:
       Find_holes(Unique_hash_map<Vertex_const_handle, bool>& omit_vertex_)
-        : omit_vertex(omit_vertex_), nov(0), nof(0) {}
+        : omit_vertex(omit_vertex_), nov(0), nof(0), hh(false) {}
 
       void visit(Halffacet_const_handle f) {
         ++nof;
@@ -917,10 +918,11 @@ protected:
             CGAL_For_all(sfc, send) {
               omit_vertex[sfc->source()->source()] = true;
               --nov;
+            hh=true;
             }
           } else if(fc.is_shalfloop()) {
             SHalfloop_const_handle sl(fc);
-            omit_vertex[sl->incident_sface()->center_vertex()];
+            omit_vertex[sl->incident_sface()->center_vertex()] = true;
             --nov;
           } else
             CGAL_error_msg( "wrong handle type");
@@ -940,6 +942,63 @@ protected:
       int number_of_facets() const {
         return nof;
       }
+
+      bool holes_detected() const {
+        return hh;
+      }
+    };
+
+    class Nested_holes {
+
+      Unique_hash_map<Vertex_const_handle, bool>& omit_vertex;
+      int norv, nof;
+
+    public:
+      Nested_holes(Unique_hash_map<Vertex_const_handle, bool>& omit_vertex_)
+        : omit_vertex(omit_vertex_), norv(0), nof(0) {}
+
+      void visit(Halffacet_const_handle f) {
+        Halffacet_cycle_const_iterator fc = f->facet_cycles_begin();
+        CGAL_assertion(fc.is_shalfedge());
+
+        SHalfedge_around_facet_const_circulator sfc(fc), send(sfc);
+        bool all_in=true;
+        bool all_out=true;
+        CGAL_For_all(sfc, send) {
+          if (omit_vertex[sfc->source()->source()])
+            all_in=false;
+          else
+            all_out=false;
+        }
+        if (!all_in && !all_out)
+        {
+          SHalfedge_around_facet_const_circulator sfc(fc), send(sfc);
+          ++nof;
+          CGAL_For_all(sfc, send) {
+            if (!omit_vertex[sfc->source()->source()])
+            {
+              omit_vertex[sfc->source()->source()]=true;
+              ++norv;
+            }
+          }
+        }
+        if (all_in)
+          ++nof;
+      }
+
+      void visit(Vertex_const_handle) {}
+      void visit(SFace_const_handle) {}
+      void visit(Halfedge_const_handle) {}
+      void visit(SHalfedge_const_handle) {}
+      void visit(SHalfloop_const_handle) {}
+
+      int number_of_removed_vertices() const {
+        return norv;
+      }
+
+      int number_of_facets() const {
+        return nof;
+      }
     };
 
     class Add_vertices {
@@ -998,14 +1057,19 @@ protected:
         se = SHalfedge_const_handle(fc);
         CGAL_assertion(se!=0);
         if(omit_vertex[se->source()->source()]) return;
-        B.begin_facet();
+
         SHalfedge_around_facet_const_circulator hc_start(se);
         SHalfedge_around_facet_const_circulator hc_end(hc_start);
+        std::vector<std::size_t> vids;
         CGAL_For_all(hc_start,hc_end) {
-          CGAL_NEF_TRACEN("   add vertex " << hc_start->source()->center_vertex()->point());
-          B.add_vertex_to_facet(VI[hc_start->source()->center_vertex()]);
+          if (omit_vertex[hc_start->source()->center_vertex()])
+          {
+            std::cout << "issue with " << se->source()->source()->point() << "\n";
+            return;
+          }
+          vids.push_back(VI[hc_start->source()->center_vertex()]);
         }
-        B.end_facet();
+        B.add_facet (vids.begin(), vids.end());
       }
 
       void visit(SFace_const_handle) {}
@@ -1030,11 +1094,29 @@ protected:
 
       Polyhedron_incremental_builder_3<HDS> B(hds, true);
 
+      // first mark vertices of holes of each halffacet as omitted.
       Find_holes F(omit_vertex);
       scd.visit_shell_objects(sf, F);
+      std::size_t nb_v = F.number_of_vertices();
+      std::size_t nb_f = F.number_of_facets();
 
-      B.begin_surface(F.number_of_vertices(),
-                      F.number_of_facets(),
+      // then if a halffacet contains a vertex marked as omitted, all its vertices
+      // must be marked as such
+      if (F.holes_detected())
+      {
+        while(true)
+        {
+          Nested_holes F2(omit_vertex);
+          scd.visit_shell_objects(sf, F2);
+          if (F2.number_of_removed_vertices()==0) break;
+          nb_v-=F2.number_of_removed_vertices();
+          nb_f=F2.number_of_facets();
+        }
+      }
+
+
+      B.begin_surface(nb_v,
+                      nb_f,
                       F.number_of_vertices()+F.number_of_facets()-2);
 
       Add_vertices A(B,omit_vertex, VI);

Nef_3/include/CGAL/boost/graph/convert_nef_polyhedron_to_polygon_mesh.h

@@ -25,6 +25,7 @@
 #include <CGAL/Triangulation_vertex_base_with_info_2.h>
 #include <CGAL/Triangulation_face_base_with_info_2.h>
 #include <CGAL/Kernel/global_functions_3.h>
+#include <CGAL/Nef_S2/Generic_handle_map.h>
 
 #include <unordered_map>
 
@@ -81,6 +82,7 @@ struct Shell_polygons_visitor
   Vertex_index_map& vertex_indices;
   PolygonRange& polygons;
   bool triangulate_all_faces;
+  CGAL::Generic_handle_map<bool> Done;
 
   Shell_polygons_visitor(Vertex_index_map& vertex_indices,
                          PolygonRange& polygons,
@@ -88,6 +90,7 @@ struct Shell_polygons_visitor
     : vertex_indices( vertex_indices )
     , polygons(polygons)
     , triangulate_all_faces(triangulate_all_faces)
+    , Done(false)
   {}
 
   std::size_t get_cycle_length( typename Nef_polyhedron::Halffacet_cycle_const_iterator hfc) const
@@ -103,6 +106,14 @@ struct Shell_polygons_visitor
 
   void visit(typename Nef_polyhedron::Halffacet_const_handle opposite_facet)
   {
+    typename Nef_polyhedron::Halffacet_const_handle twin_facet = opposite_facet->twin();
+
+    // skip when we have to do with the unbounded volume and a surface with boundaries
+    if ((twin_facet->incident_volume() == opposite_facet->incident_volume()) && Done[twin_facet])
+        return;
+
+    Done[opposite_facet] = true;
+
     bool is_marked=opposite_facet->incident_volume()->mark();
 
     CGAL_assertion(Nef_polyhedron::Infi_box::is_standard(opposite_facet->plane()));
@@ -351,18 +362,50 @@ void convert_nef_polyhedron_to_polygon_soup(const Nef_polyhedron& nef,
   typedef Cartesian_converter<Nef_Kernel, Output_kernel> Converter;
   typename Nef_polyhedron::Volume_const_iterator vol_it = nef.volumes_begin(),
                                                  vol_end = nef.volumes_end();
-  if ( Nef_polyhedron::Infi_box::extended_kernel() ) ++vol_it; // skip Infi_box
-  CGAL_assertion ( vol_it != vol_end );
-  ++vol_it; // skip unbounded volume
+
+  if (Nef_polyhedron::Infi_box::extended_kernel()) ++vol_it; // skip Infi_box
+
+  if ( vol_it == vol_end ) return;
 
   Converter to_output;
+  bool handling_unbounded_volume = true;
+
+  auto shell_is_closed = [](typename Nef_polyhedron::Shell_entry_const_iterator sfh)
+  {
+    typename Nef_polyhedron::SFace_const_handle sf = sfh;
+
+    typename Nef_polyhedron::SFace_cycle_const_iterator fc;
+    for(fc = sf->sface_cycles_begin(); fc != sf->sface_cycles_end(); ++fc)
+    {
+      if (fc.is_shalfedge() ) {
+        typename Nef_polyhedron::SHalfedge_const_handle e(fc);
+        typename Nef_polyhedron::SHalfedge_around_sface_const_circulator ec(e),ee(e);
+        CGAL_For_all(ec,ee)
+        {
+          typename Nef_polyhedron::Halffacet_const_handle f = ec->twin()->facet();
+          if (f->incident_volume()==f->twin()->incident_volume())
+            return false;
+        }
+      }
+    }
+
+    return true;
+  };
+
   for (;vol_it!=vol_end;++vol_it)
-    nef_to_pm::collect_polygon_mesh_info(points,
-                                         polygons,
-                                         nef,
-                                         vol_it->shells_begin(),
-                                         to_output,
-                                         triangulate_all_faces);
+  {
+    for(auto sit = vol_it->shells_begin(); sit != vol_it->shells_end(); ++sit)
+    {
+      if ( (handling_unbounded_volume || sit!=vol_it->shells_begin()) && shell_is_closed(sit)) continue;
+      nef_to_pm::collect_polygon_mesh_info(points,
+                                           polygons,
+                                           nef,
+                                           sit,
+                                           to_output,
+                                           triangulate_all_faces);
+    }
+    handling_unbounded_volume = false;
+  }
 }
 
 template <class Nef_polyhedron, class Polygon_mesh>

Nef_3/test/Nef_3/issue_6423.cpp

@@ -0,0 +1,45 @@
+#include <CGAL/Exact_predicates_exact_constructions_kernel.h>
+#include <CGAL/Nef_polyhedron_3.h>
+#include <CGAL/IO/Nef_polyhedron_iostream_3.h>
+#include <CGAL/boost/graph/convert_nef_polyhedron_to_polygon_mesh.h>
+#include <CGAL/boost/graph/generators.h>
+#include <CGAL/Surface_mesh.h>
+
+typedef CGAL::Exact_predicates_exact_constructions_kernel Kernel;
+typedef Kernel::Point_3 Point_3;
+typedef CGAL::Surface_mesh<Point_3> SurfaceMesh;
+typedef CGAL::Nef_polyhedron_3<Kernel> NefPolyhedron;
+
+
+int main()
+{
+    SurfaceMesh surfaceMesh;
+    SurfaceMesh::Vertex_index v0 = surfaceMesh.add_vertex(Point_3(-1, 0, 0));
+    SurfaceMesh::Vertex_index v1 = surfaceMesh.add_vertex(Point_3(1, 0, 0));
+    SurfaceMesh::Vertex_index v2 = surfaceMesh.add_vertex(Point_3(0, 1, 0));
+
+    SurfaceMesh::Vertex_index v3 = surfaceMesh.add_vertex(Point_3(-1, 0, 1));
+    SurfaceMesh::Vertex_index v4 = surfaceMesh.add_vertex(Point_3(1, 0, 1));
+    SurfaceMesh::Vertex_index v5 = surfaceMesh.add_vertex(Point_3(0, 1, 1));
+
+    surfaceMesh.add_face(v0, v1, v2);
+    surfaceMesh.add_face(v3, v4, v5);
+
+    make_tetrahedron(Point_3(-1, 0, 10),
+                     Point_3(1, 0, 10),
+                     Point_3(0, 1, 10),
+                     Point_3(-1, 0, 11),
+                     surfaceMesh);
+
+    std::cout << "Before conversion, number_of_faces: " << surfaceMesh.number_of_faces() << std::endl;
+
+    NefPolyhedron nefPoly(surfaceMesh);
+    std::cout << "NefPolyhedron, number_of_faces: " << nefPoly.number_of_facets() << std::endl;
+    SurfaceMesh convertedSurfaceMesh;
+    CGAL::convert_nef_polyhedron_to_polygon_mesh(nefPoly, convertedSurfaceMesh, true);
+    std::cout << "After conversion, number_of_faces: " << convertedSurfaceMesh.number_of_faces() << std::endl;
+    std::ofstream("out.off") << convertedSurfaceMesh;
+    assert(vertices(convertedSurfaceMesh).size()==10);
+    assert(faces(convertedSurfaceMesh).size()==6);
+    return EXIT_SUCCESS;
+}

Number_types/test/Number_types/Interval_nt_new.cpp

@@ -122,7 +122,7 @@ int main() {
         CGAL_catch_error((bool)(I<=J),CGAL::Uncertain_conversion_exception&);
         CGAL_catch_error((bool)(I>=J),CGAL::Uncertain_conversion_exception&);
         CGAL_catch_error((bool)(J> I),CGAL::Uncertain_conversion_exception&);
-        CGAL_catch_error((bool)(J> I),CGAL::Uncertain_conversion_exception&);
+        CGAL_catch_error((bool)(J< I),CGAL::Uncertain_conversion_exception&);
         CGAL_catch_error((bool)(J>=I),CGAL::Uncertain_conversion_exception&);
         CGAL_catch_error((bool)(J<=I),CGAL::Uncertain_conversion_exception&);
 

Orthtree/include/CGAL/Orthtree/Traversals.h

@@ -143,7 +143,6 @@ public:
 
   \tparam Tree an instance of `Orthtree`
 
-  All tree nodes at another depth are ignored. If the selected depth is
   All tree nodes at another depth are ignored. If the selected depth is
   higher than the maximum depth of the orthtree, no node will be traversed.
 

Periodic_3_triangulation_3/demo/Periodic_Lloyd_3/MainWindow.cpp

@@ -119,7 +119,7 @@ MainWindow::loadPoints()
   for (int i=0 ; i<8 ; i++) {
     cx += dom[i].x();
     cy += dom[i].y();
-    cy += dom[i].y();
+    cz += dom[i].z();
   }
   CGAL::qglviewer::Vec center(cx/8.,cy/8.,cz/8.);
   viewer->setSceneCenter(center);
@@ -188,7 +188,7 @@ MainWindow::newPoints(int n)
   for (int i=0 ; i<8 ; i++) {
     cx += dom[i].x();
     cy += dom[i].y();
-    cy += dom[i].y();
+    cz += dom[i].z();
   }
   CGAL::qglviewer::Vec center(cx/8.,cy/8.,cz/8.);
   viewer->setSceneCenter(center);
@@ -223,5 +223,3 @@ void MainWindow::help() {
       tr("Could not start Qt Assistant from %1.").arg(app));
   }
 }
-
-

Periodic_3_triangulation_3/include/CGAL/Periodic_3_regular_triangulation_3.h

@@ -931,7 +931,7 @@ public:
 
         CGAL_assertion(this->int_to_off(offsets[i])[0] == 0 || this->int_to_off(offsets[i])[0] == 1);
         CGAL_assertion(this->int_to_off(offsets[i])[1] == 0 || this->int_to_off(offsets[i])[1] == 1);
-        CGAL_assertion(this->int_to_off(offsets[i])[1] == 0 || this->int_to_off(offsets[i])[1] == 1);
+        CGAL_assertion(this->int_to_off(offsets[i])[2] == 0 || this->int_to_off(offsets[i])[2] == 1);
       }
 
       c->set_offsets(offsets[0], offsets[1], offsets[2], offsets[3]);

Point_set_processing_3/include/CGAL/IO/write_off_points.h

@@ -25,7 +25,6 @@
 
 #include <iostream>
 #include <fstream>
-#include <fstream>
 #include <iterator>
 #include <type_traits>
 

Polygon_mesh_processing/doc/Polygon_mesh_processing/examples.txt

@@ -48,5 +48,5 @@
 \example Polygon_mesh_processing/remesh_almost_planar_patches.cpp
 \example Polygon_mesh_processing/sample_example.cpp
 \example Polygon_mesh_processing/soup_autorefinement.cpp
-*/
+
 */

Polygon_mesh_processing/examples/Polygon_mesh_processing/CMakeLists.txt

@@ -95,30 +95,29 @@ endif()
 
 find_package(OpenMesh QUIET)
 if(OpenMesh_FOUND)
-  include(UseOpenMesh)
+  include(CGAL_OpenMesh_support)
 
   create_single_source_cgal_program("compute_normals_example_OM.cpp")
-  target_link_libraries(compute_normals_example_OM PRIVATE ${OPENMESH_LIBRARIES})
+  target_link_libraries(compute_normals_example_OM PRIVATE CGAL::OpenMesh_support)
   create_single_source_cgal_program("corefinement_OM_union.cpp")
-  target_link_libraries(corefinement_OM_union PRIVATE ${OPENMESH_LIBRARIES})
+  target_link_libraries(corefinement_OM_union PRIVATE CGAL::OpenMesh_support)
 
   if(TARGET CGAL::Eigen3_support)
     create_single_source_cgal_program("hole_filling_example_OM.cpp")
-    target_link_libraries(hole_filling_example_OM PRIVATE CGAL::Eigen3_support ${OPENMESH_LIBRARIES})
+    target_link_libraries(hole_filling_example_OM PRIVATE CGAL::Eigen3_support CGAL::OpenMesh_support)
   endif()
 
   create_single_source_cgal_program("point_inside_example_OM.cpp")
-  target_link_libraries(point_inside_example_OM PRIVATE ${OPENMESH_LIBRARIES})
+  target_link_libraries(point_inside_example_OM PRIVATE CGAL::OpenMesh_support)
 
   create_single_source_cgal_program("stitch_borders_example_OM.cpp")
-  target_link_libraries(stitch_borders_example_OM PRIVATE ${OPENMESH_LIBRARIES})
+  target_link_libraries(stitch_borders_example_OM PRIVATE CGAL::OpenMesh_support)
 
   #create_single_source_cgal_program("remove_degeneracies_example.cpp")
-  #target_link_libraries(remove_degeneracies_example PRIVATE ${OPENMESH_LIBRARIES})
-  #target_compile_definitions(remove_degeneracies_example PRIVATE -DCGAL_USE_OPENMESH)
+  #target_link_libraries(remove_degeneracies_example PRIVATE CGAL::OpenMesh_support)
 
   create_single_source_cgal_program("triangulate_faces_example_OM.cpp")
-  target_link_libraries(triangulate_faces_example_OM PRIVATE ${OPENMESH_LIBRARIES})
+  target_link_libraries(triangulate_faces_example_OM PRIVATE CGAL::OpenMesh_support)
 else()
   message(STATUS "NOTICE: Examples that use OpenMesh will not be compiled.")
 endif()

Polygon_mesh_processing/test/Polygon_mesh_processing/CMakeLists.txt

@@ -114,9 +114,9 @@ endif()
 
 find_package(OpenMesh QUIET)
 if(OpenMesh_FOUND)
-  include(UseOpenMesh)
+  include(CGAL_OpenMesh_support)
   create_single_source_cgal_program("remeshing_test_P_SM_OM.cpp")
-  target_link_libraries(remeshing_test_P_SM_OM PRIVATE ${OPENMESH_LIBRARIES})
+  target_link_libraries(remeshing_test_P_SM_OM PRIVATE CGAL::OpenMesh_support)
 else()
   message(STATUS "NOTICE: Tests that use OpenMesh will not be compiled.")
 endif()

Polyhedron/doc/Polyhedron/Polyhedron.txt

@@ -385,20 +385,20 @@ polyhedral surface gives alias names renaming face to facet.
 
 class Polyhedron_items_3 {
 public:
-template < class Refs, class Traits>
-struct Vertex_wrapper {
-typedef typename Traits::Point_3 Point;
-typedef CGAL::HalfedgeDS_vertex_base<Refs, CGAL::Tag_true, Point> Vertex;
-};
-template < class Refs, class Traits>
-struct Halfedge_wrapper {
-typedef CGAL::HalfedgeDS_halfedge_base<Refs> Halfedge;
-};
-template < class Refs, class Traits>
-struct Face_wrapper {
-typedef typename Traits::Plane_3 Plane;
-typedef CGAL::HalfedgeDS_face_base<Refs, CGAL::Tag_true, Plane> Face;
-};
+  template < class Refs, class Traits>
+  struct Vertex_wrapper {
+    typedef typename Traits::Point_3 Point;
+    typedef CGAL::HalfedgeDS_vertex_base<Refs, CGAL::Tag_true, Point> Vertex;
+  };
+  template < class Refs, class Traits>
+  struct Halfedge_wrapper {
+    typedef CGAL::HalfedgeDS_halfedge_base<Refs> Halfedge;
+  };
+  template < class Refs, class Traits>
+  struct Face_wrapper {
+    typedef typename Traits::Plane_3 Plane;
+    typedef CGAL::HalfedgeDS_face_base<Refs, CGAL::Tag_true, Plane> Face;
+  };
 };
 
 \endcode
@@ -426,7 +426,7 @@ faces but would be for vertices - and add the color attribute.
 
 template <class Refs>
 struct My_face : public CGAL::HalfedgeDS_face_base<Refs> {
-CGAL::IO::Color color;
+  CGAL::IO::Color color;
 };
 
 \endcode
@@ -440,10 +440,10 @@ used.
 \code{.cpp}
 
 struct My_items : public CGAL::Polyhedron_items_3 {
-template <class Refs, class Traits>
-struct Face_wrapper {
-typedef My_face<Refs> Face;
-};
+  template <class Refs, class Traits>
+  struct Face_wrapper {
+    typedef My_face<Refs> Face;
+  };
 };
 
 \endcode
@@ -479,8 +479,8 @@ works as illustrated above.
 
 template <class Refs>
 struct My_face : public CGAL::HalfedgeDS_face_base<Refs> {
-typedef typename Refs::Vertex_handle Vertex_handle;
-Vertex_handle vertex_ref;
+  typedef typename Refs::Vertex_handle Vertex_handle;
+  Vertex_handle vertex_ref;
 };
 
 \endcode

Property_map/test/Property_map/CMakeLists.txt

@@ -13,10 +13,8 @@ create_single_source_cgal_program("test_Property_container.cpp")
 find_package(OpenMesh QUIET)
 if(OpenMesh_FOUND)
   message(STATUS "Found OpenMesh")
-  include(UseOpenMesh)
-
-  target_link_libraries(dynamic_properties_test PRIVATE ${OPENMESH_LIBRARIES})
-  target_compile_definitions(dynamic_properties_test PRIVATE -DCGAL_USE_OPENMESH)
+  include(CGAL_OpenMesh_support)
+  target_link_libraries(dynamic_properties_test PRIVATE CGAL::OpenMesh_support)
 else()
   message(STATUS "NOTICE: Tests will not use OpenMesh.")
 endif()

REUSE.toml

@@ -0,0 +1,53 @@
+version = 1
+SPDX-PackageName = "CGAL"
+SPDX-PackageSupplier = "CGAL Editorial Board <info@cgal.org>"
+SPDX-PackageDownloadLocation = "https://github.com/CGAL/cgal"
+
+[[annotations]]
+path = [
+        ".**",
+        "**.cmake",
+        "**.md",
+        ".github/**",
+        "Maintenance/**",
+        "**/TODO",
+        "**/doc/**",
+        "**/deb/**",
+        "**/applications/**",
+        "**/doc_html/**",
+        "**/scripts/**",
+        "**/developer_scripts/**",
+        "**/demo/**",
+        "**/examples/**",
+        "**/src/**",
+        "**/test/**",
+        "**/benchmarks/**",
+        "**/benchmark/**",
+        "**/package_info/**",
+        "**/data/**",
+        "**/cmake/**",
+        "**/*.natvis",
+]
+precedence = "aggregate"
+SPDX-FileCopyrightText = "1995-2024 The CGAL Project"
+SPDX-License-Identifier = "CC0-1.0"
+
+[[annotations]]
+path = [
+        "REUSE.toml",
+        "CMakeLists.txt",
+        "cmake_uninstall.cmake.in",
+        "GraphicsView/include/CGAL/Qt/ImageInterface.ui",
+        "GraphicsView/include/CGAL/Qt/resources/qglviewer-icon.xpm",
+        "Installation/AUTHORS",
+        "Installation/CMakeLists.txt",
+        "Installation/README",
+        "Installation/auxiliary/cgal_create_cmake_script.1",
+        "Installation/auxiliary/gmp/README",
+        "Installation/include/CGAL/license/gpl_package_list.txt",
+        "MacOSX/auxiliary/cgal_app.icns",
+        "copyright",
+]
+precedence = "aggregate"
+SPDX-FileCopyrightText = "1995-2024 The CGAL Project"
+SPDX-License-Identifier = "CC0-1.0"

Ridges_3/doc/Ridges_3/Ridges_3.txt

@@ -45,7 +45,7 @@ functions of the package are provided in Section \ref Ridges_3Examples.
 For a detailed introduction to ridges and related topics, the reader
 may consult
 \cgalCite{cgal:hgygm-ttdpf-99},\cgalCite{cgal:p-gd-01}, as well as
-the following survey article \cgalCite{cgal:cp-ssulc-05}.
+the survey article \cgalCite{cgal:cp-ssulc-05}.
 In the sequel, we just introduce the basic notions so as to explain
 our algorithms. Consider a smooth embedded surface, and denote \f$ k_1\f$
 and \f$ k_2\f$ the principal curvatures, with \f$ k_1\geq k_2\f$. Umbilics are
@@ -399,7 +399,7 @@ neighborhood.
 \subsection Ridges_3Exampleprogram Example Program
 
 The following program computes ridges and umbilics from an off
-file.\cgalFootnote{Model data may be downloaded via ftp://ftp.mpi-sb.mpg.de/pub/outgoing/CGAL/Ridges_3_datafiles.tgz . The mechanical part model has been provided courtesy of Dassault System to produce \cgalFigureRef{figmechanical_crest_filteredintro}, due to copyright issues the available model is not the same, it is provided by the AIM\@SHAPE Shape Repository.} It uses the package \ref PkgJetFitting3 to estimate the differential
+file. It uses the package \ref PkgJetFitting3 to estimate the differential
 quantities.
 The default output file gives rough data for visualization purpose, a
 verbose output file may also be asked for. Parameters are
@@ -533,11 +533,7 @@ Ridges on the ellipsoid, normals pointing outward. Color coding :
 \subsection Ridges_3ExampleFilteringofCrestRidgesona Example: Filtering of Crest Ridges on a Mechanical Part
 
 \cgalFigureRef{figmechanical_crest_filteredintro} illustrates the filtering
-of crest ridges on a mechanical model, and has been computed as follows:
-
-\code{.cpp}
-./Compute_Ridges_Umbilics -f data/mecanic.off -d 4 -m 4 -a 4 -t 4
-\endcode
+of crest ridges on a mechanical model.
 
 \cgalFigureBegin{figmechanical_crest_filteredintro,mecanic-sub1_crest-jpg.png}
 Mechanical part (37k pts). Left: All crest lines. Middle:  crests filtered

STL_Extension/test/STL_Extension/CMakeLists.txt

@@ -64,10 +64,10 @@ endif()
 find_package(OpenMesh QUIET)
 if(OpenMesh_FOUND)
   message(STATUS "Found OpenMesh")
-  include(UseOpenMesh)
+  include(CGAL_OpenMesh_support)
 
   create_single_source_cgal_program("test_hash_OpenMesh.cpp")
-  target_link_libraries(test_hash_OpenMesh PRIVATE ${OPENMESH_LIBRARIES})
+  target_link_libraries(test_hash_OpenMesh PRIVATE CGAL::OpenMesh_support)
 else()
   message(STATUS "NOTICE: Tests that use OpenMesh will not be compiled.")
 endif()

Scripts/developer_scripts/cgal_create_package_dir.py

@@ -26,6 +26,7 @@ creationpath = args.creationpath
 
 doxystring = \
 r"""@INCLUDE = ${CGAL_DOC_PACKAGE_DEFAULTS}
+
 PROJECT_NAME = "CGAL ${CGAL_DOC_VERSION} - Put title of project here"
 """
 

Scripts/developer_scripts/create_new_release

@@ -323,6 +323,9 @@ if [ -n "$DO_PUBLIC" ]; then
     zip -q -r ${public_release_name}-library.zip ${public_release_name}
     mv ${public_release_name}*.tar.xz "${HTML_DIR}/${release_name}-public/"
     mv ${public_release_name}*.zip "${HTML_DIR}/${release_name}-public/"
+    if command -v sestatus >/dev/null 2>&1; then
+        sestatus && restorecon -R "${HTML_DIR}/${release_name}-public"
+    fi
     rm -f "$HTML_DIR/CGAL-last-public"
     ln -s "${release_name}-public" "$HTML_DIR/CGAL-last-public"
 fi

Scripts/developer_scripts/run_doxygen_testsuite

@@ -6,7 +6,7 @@ cd /home/cgal-testsuite
 
 # Rotate log files on one month: the logfile name contains the number of
 # the day
-LOGFILE=$PWD/doxygen_testsuite-`date '+%d'`.log
+LOGFILE=$PWD/doxygen_testsuite-$(date '+%d').log
 
 exec > "$LOGFILE"
 
@@ -39,8 +39,8 @@ if [ -r "${CGAL_DOC_BUILD}" ]; then
     rm -rf "${CGAL_DOC_BUILD}"
 fi
 
-mkdir ${CGAL_DOC_BUILD}
-cd ${CGAL_DOC_BUILD}
+mkdir "${CGAL_DOC_BUILD}"
+cd "${CGAL_DOC_BUILD}"
 
 if [ -r "LATEST" ]; then
     rm -rf LATEST
@@ -52,12 +52,12 @@ if [ ! -f "LATEST" ]; then
     error "COULD NOT DOWNLOAD LATEST!"
 fi
 
-for i in `cat LATEST`
+for i in $(cat LATEST)
 do
     CGAL_LOCATION="${CGAL_URL}/${i}";
     CGAL_ZIPFILE="${i}";
 done
-CGAL_RELEASE_ID=`echo $CGAL_ZIPFILE | sed "s/.tar.gz//"`
+CGAL_RELEASE_ID=$(echo "$CGAL_ZIPFILE" | sed "s/.tar.gz//")
 
 curl ${CURL_OPTS} "${CGAL_LOCATION}"
 tar xvzf "${CGAL_ZIPFILE}" && rm "${CGAL_ZIPFILE}"
@@ -68,11 +68,16 @@ cd "${CGAL_RELEASE_ID}"
 
 PATH=/home/cgal-testsuite/local/bin:$PATH
 export PATH
-cd "$PWD/doc/scripts"
+cd "${PWD}/doc/scripts"
 bash -$- ./process_doc.sh /home/cgal-testsuite/bin/doxygen_1_8_13 /home/cgal-testsuite/bin/doxygen_1_9_6 /srv/CGAL/www/Members/Manual_doxygen_test
 if head -2 ../../.scm-branch | grep -q cgal/master; then
     rsync -a --delete "/srv/CGAL/www/Members/Manual_doxygen_test/${CGAL_RELEASE_ID}/output2/" /srv/CGAL/www/doc/master/
 fi
+if sestatus &>/dev/null && [ -d "/srv/CGAL/www/doc/master/" ] && [ -d "/srv/CGAL/www/Members/Manual_doxygen_test/${CGAL_RELEASE_ID}" ]; then
+    restorecon -R /srv/CGAL/www/doc/master/ /srv/CGAL/www/Members/Manual_doxygen_test/${CGAL_RELEASE_ID} || error "restorecon command failed"
+else
+    error "SELinux is not enabled or the paths do not exist"
+fi
 rm -rf "${CGAL_DOC_BUILD}"
 # Then gzip the log file, to save space
 exec

Shape_detection/include/CGAL/Shape_detection/Region_growing/Polygon_mesh/Least_squares_plane_fit_region.h

@@ -19,6 +19,9 @@
 // Internal includes.
 #include <CGAL/Shape_detection/Region_growing/internal/property_map.h>
 #include <CGAL/Shape_detection/Region_growing/internal/utils.h>
+#ifdef CGAL_SD_RG_USE_PMP
+#include <CGAL/Polygon_mesh_processing/compute_normal.h>
+#endif
 
 namespace CGAL {
 namespace Shape_detection {
@@ -83,6 +86,7 @@ namespace Polygon_mesh {
     using Point_3 = typename GeomTraits::Point_3;
     using Vector_3 = typename GeomTraits::Vector_3;
     using Plane_3 = typename GeomTraits::Plane_3;
+    using Triangle_3 = typename GeomTraits::Triangle_3;
 
     using Squared_length_3 = typename GeomTraits::Compute_squared_length_3;
     using Squared_distance_3 = typename GeomTraits::Compute_squared_distance_3;
@@ -156,7 +160,54 @@ namespace Polygon_mesh {
     m_squared_length_3(m_traits.compute_squared_length_3_object()),
     m_squared_distance_3(m_traits.compute_squared_distance_3_object()),
     m_scalar_product_3(m_traits.compute_scalar_product_3_object()),
-    m_cross_product_3(m_traits.construct_cross_product_vector_3_object()) {
+    m_cross_product_3(m_traits.construct_cross_product_vector_3_object()),
+    m_face_normals( get(CGAL::dynamic_face_property_t<Vector_3>(), pmesh) ),
+    m_face_triangulations( get(CGAL::dynamic_face_property_t<std::vector<Triangle_3>>(), pmesh) )
+    {
+
+#ifdef CGAL_SD_RG_USE_PMP
+    auto get_face_normal = [this](Item face, const PolygonMesh& pmesh)
+    {
+      return Polygon_mesh_processing::compute_face_normal(face, pmesh, parameters::vertex_point_map(m_vertex_to_point_map));
+    };
+#else
+    auto get_face_normal = [this](Item face, const PolygonMesh& pmesh) -> Vector_3
+    {
+      const auto hedge = halfedge(face, pmesh);
+      const auto vertices = vertices_around_face(hedge, pmesh);
+      CGAL_precondition(vertices.size() >= 3);
+
+      auto vertex = vertices.begin();
+      const Point_3& p1 = get(m_vertex_to_point_map, *vertex); ++vertex;
+      const Point_3& p2 = get(m_vertex_to_point_map, *vertex); ++vertex;
+      Point_3 p3 = get(m_vertex_to_point_map, *vertex);
+      while(collinear(p1, p2, p3))
+      {
+        if (++vertex == vertices.end()) return NULL_VECTOR;
+        p3 = get(m_vertex_to_point_map, *vertex);
+      }
+
+      const Vector_3 u = p2 - p1;
+      const Vector_3 v = p3 - p1;
+      return m_cross_product_3(u, v);
+    };
+#endif
+
+      for (const Item &i : faces(pmesh)) {
+        put(m_face_normals, i, get_face_normal(i, pmesh));
+        std::vector<Point_3> pts;
+        auto h = halfedge(i, pmesh);
+        auto s = h;
+
+        do {
+          pts.push_back(get(m_vertex_to_point_map, target(h, pmesh)));
+          h = next(h, pmesh);
+        } while (h != s);
+
+        std::vector<Triangle_3> face_triangulation;
+        internal::triangulate_face<GeomTraits>(pts, face_triangulation);
+        put(m_face_triangulations, i, face_triangulation);
+      }
 
       CGAL_precondition(faces(m_face_graph).size() > 0);
       const FT max_distance = parameters::choose_parameter(
@@ -234,7 +285,7 @@ namespace Polygon_mesh {
       const FT squared_distance_threshold =
         m_distance_threshold * m_distance_threshold;
 
-      const Vector_3 face_normal = get_face_normal(query);
+      const Vector_3 face_normal = get(m_face_normals, query);
       const FT cos_value = m_scalar_product_3(face_normal, m_normal_of_best_fit);
       const FT squared_cos_value = cos_value * cos_value;
 
@@ -284,7 +335,7 @@ namespace Polygon_mesh {
         // The best fit plane will be a plane through this face centroid with
         // its normal being the face's normal.
         const Point_3 face_centroid = get_face_centroid(face);
-        const Vector_3 face_normal = get_face_normal(face);
+        const Vector_3 face_normal = get(m_face_normals, face);
         if (face_normal == CGAL::NULL_VECTOR) return false;
 
         CGAL_precondition(face_normal != CGAL::NULL_VECTOR);
@@ -315,8 +366,8 @@ namespace Polygon_mesh {
       // This fix is proposed by nh2:
       // https://github.com/CGAL/cgal/pull/4563
       const Plane_3 unoriented_plane_of_best_fit =
-        internal::create_plane_from_faces(
-          m_face_graph, region, m_vertex_to_point_map, m_traits).first;
+        internal::create_plane_from_triangulated_faces(
+          region, m_face_triangulations, m_traits).first;
       const Vector_3 unoriented_normal_of_best_fit =
         unoriented_plane_of_best_fit.orthogonal_vector();
 
@@ -325,7 +376,7 @@ namespace Polygon_mesh {
       // Approach: each face gets one vote to keep or flip the current plane normal.
       long votes_to_keep_normal = 0;
       for (const auto &face : region) {
-        const Vector_3 face_normal = get_face_normal(face);
+        const Vector_3 face_normal = get(m_face_normals, face);
         const bool agrees =
           m_scalar_product_3(face_normal, unoriented_normal_of_best_fit) > FT(0);
         votes_to_keep_normal += (agrees ? 1 : -1);
@@ -357,6 +408,9 @@ namespace Polygon_mesh {
     const Scalar_product_3 m_scalar_product_3;
     const Cross_product_3 m_cross_product_3;
 
+    typename boost::property_map<Face_graph, CGAL::dynamic_face_property_t<Vector_3> >::const_type m_face_normals;
+    typename boost::property_map<Face_graph, CGAL::dynamic_face_property_t<std::vector<Triangle_3>> >::const_type m_face_triangulations;
+
     Plane_3 m_plane_of_best_fit;
     Vector_3 m_normal_of_best_fit;
 
@@ -383,25 +437,6 @@ namespace Polygon_mesh {
       return Point_3(x, y, z);
     }
 
-    // Compute normal of the face.
-    template<typename Face>
-    Vector_3 get_face_normal(const Face& face) const {
-
-      const auto hedge = halfedge(face, m_face_graph);
-      const auto vertices = vertices_around_face(hedge, m_face_graph);
-      CGAL_precondition(vertices.size() >= 3);
-
-      auto vertex = vertices.begin();
-      const Point_3& point1 = get(m_vertex_to_point_map, *vertex); ++vertex;
-      const Point_3& point2 = get(m_vertex_to_point_map, *vertex); ++vertex;
-      const Point_3& point3 = get(m_vertex_to_point_map, *vertex);
-
-      const Vector_3 u = point2 - point1;
-      const Vector_3 v = point3 - point1;
-      const Vector_3 face_normal = m_cross_product_3(u, v);
-      return face_normal;
-    }
-
     // The maximum squared distance from the vertices of the face
     // to the best fit plane.
     template<typename Face>

Shape_detection/include/CGAL/Shape_detection/Region_growing/internal/utils.h

@@ -46,6 +46,11 @@
 #include <CGAL/boost/iterator/counting_iterator.hpp>
 #include <CGAL/Exact_predicates_inexact_constructions_kernel.h>
 #include <CGAL/Iterator_range.h>
+#ifdef CGAL_SD_RG_USE_PMP
+#include <CGAL/Polygon_mesh_processing/triangulate_hole.h>
+#else
+#include <CGAL/centroid.h>
+#endif
 
 namespace CGAL {
 namespace Shape_detection {
@@ -61,7 +66,7 @@ namespace internal {
     mutable T it;
   };
 
-  // TODO: this should be customisable in named function parameters
+  // TODO: this should be customizable in named function parameters
   template<class T, bool = CGAL::is_iterator<T>::value>
   struct hash_item {};
 
@@ -329,6 +334,30 @@ namespace internal {
     return create_plane(tmp, item_map, traits);
   }
 
+  template <class Traits>
+  void
+  triangulate_face(const std::vector<typename Traits::Point_3>& points,
+                         std::vector<typename Traits::Triangle_3>& triangles)
+  {
+#ifdef CGAL_SD_RG_USE_PMP
+    std::vector<CGAL::Triple<int, int, int>> output;
+
+    Polygon_mesh_processing::triangulate_hole_polyline(points, std::back_inserter(output), parameters::use_2d_constrained_delaunay_triangulation(true));
+
+    triangles.reserve(output.size());
+    for (const auto& t : output)
+      triangles.emplace_back(points[t.first], points[t.second], points[t.third]);
+#else
+    //use a triangulation using the centroid
+    std::size_t nb_edges = points.size();
+    typename Traits::Point_3 c = CGAL::centroid(points.begin(), points.end());
+    triangles.reserve(nb_edges);
+    for (std::size_t i=0; i<nb_edges-1; ++i)
+      triangles.emplace_back(points[i], points[i+1], c);
+    triangles.emplace_back(points.back(), points.front(), c);
+#endif
+  }
+
   template<
   typename Traits,
   typename FaceGraph,
@@ -369,14 +398,7 @@ namespace internal {
       if (points.size()==3)
         triangles.push_back(ITriangle_3(points[0], points[1], points[2]));
       else
-      {
-        //use a triangulation using the centroid
-        std::size_t nb_edges = points.size();
-        IPoint_3 c = CGAL::centroid(points.begin(), points.end());
-        points.push_back(points.front());
-        for (std::size_t i=0; i<nb_edges; ++i)
-          triangles.push_back(ITriangle_3(points[i], points[i+1], c));
-      }
+        triangulate_face<ITraits>(points, triangles);
     }
     CGAL_precondition(triangles.size() >= region.size());
     IPlane_3 fitted_plane;
@@ -395,6 +417,59 @@ namespace internal {
     return std::make_pair(plane, static_cast<FT>(score));
   }
 
+  template<
+    typename Traits,
+    typename Region,
+    typename FaceToTrianglesMap>
+  std::pair<typename Traits::Plane_3, typename Traits::FT>
+    create_plane_from_triangulated_faces(
+      const Region& region,
+      const FaceToTrianglesMap &face_to_triangles_map, const Traits&) {
+
+    using FT = typename Traits::FT;
+    using Plane_3 = typename Traits::Plane_3;
+    using Triangle_3 = typename Traits::Triangle_3;
+
+    using ITraits = CGAL::Exact_predicates_inexact_constructions_kernel;
+    using IConverter = CGAL::Cartesian_converter<Traits, ITraits>;
+
+    using IFT = typename ITraits::FT;
+    using IPoint_3 = typename ITraits::Point_3;
+    using ITriangle_3 = typename ITraits::Triangle_3;
+    using IPlane_3 = typename ITraits::Plane_3;
+
+    std::vector<ITriangle_3> triangles;
+    CGAL_precondition(region.size() > 0);
+    triangles.reserve(region.size());
+    const IConverter iconverter = IConverter();
+
+    for (const typename Region::value_type face : region) {
+      const std::vector<Triangle_3>& tris = get(face_to_triangles_map, face);
+
+      // Degenerate polygons are omitted.
+      if (tris.empty())
+        continue;
+
+      for (const auto &tri : tris)
+        triangles.push_back(iconverter(tri));
+    }
+    CGAL_precondition(!triangles.empty());
+    IPlane_3 fitted_plane;
+    IPoint_3 fitted_centroid;
+    const IFT score = CGAL::linear_least_squares_fitting_3(
+      triangles.begin(), triangles.end(),
+      fitted_plane, fitted_centroid,
+      CGAL::Dimension_tag<2>(), ITraits(),
+      CGAL::Eigen_diagonalize_traits<IFT, 3>());
+
+    const Plane_3 plane(
+      static_cast<FT>(fitted_plane.a()),
+      static_cast<FT>(fitted_plane.b()),
+      static_cast<FT>(fitted_plane.c()),
+      static_cast<FT>(fitted_plane.d()));
+    return std::make_pair(plane, static_cast<FT>(score));
+  }
+
   template<
   typename Traits,
   typename Region,

Stream_support/test/Stream_support/data/simple_ascii.ply

@@ -0,0 +1,16 @@
+ply
+format ascii 1.0
+comment VCGLIB generated
+element vertex 3
+property float x
+property float y
+property float z
+property float nx
+property float ny
+property float nz
+element face 0
+property list uchar int vertex_indices
+end_header
+1 1 1 2 2 2 
+3 3 3 4 4 4 
+5 5 5 6 6 6 

Stream_support/test/Stream_support/issue8155.cpp

@@ -0,0 +1,50 @@
+#include <CGAL/Simple_cartesian.h>
+
+#include <CGAL/config.h>
+#include <CGAL/IO/read_ply_points.h>
+#include <CGAL/property_map.h>
+#include <boost/iterator/function_output_iterator.hpp>
+
+#include <cassert>
+#include <fstream>
+#include <string>
+#include <vector>
+
+typedef CGAL::Simple_cartesian<double> Kernel;
+typedef Kernel::FT FT;
+typedef Kernel::Point_3 Point_3;
+typedef Kernel::Vector_3 Vector_3;
+typedef std::pair<Point_3, Vector_3> PointVectorPair;
+typedef CGAL::First_of_pair_property_map<PointVectorPair> Point_map;
+typedef CGAL::Second_of_pair_property_map<PointVectorPair> Normal_map;
+
+int main()
+{
+  std::vector<PointVectorPair> pv_pairs;
+  const std::function<void(const PointVectorPair& p)> lambda =
+    [&](const PointVectorPair& p) {
+    FT len = p.second.squared_length();
+    if (len > 0 || len != 1.0) {
+      Vector_3 n = p.second * (1.0 / CGAL::sqrt(len));
+      pv_pairs.push_back(std::make_pair(p.first, n));
+    }
+    else pv_pairs.push_back(p);
+    };
+
+  pv_pairs.clear();
+  std::ifstream file("data/simple_ascii.ply");
+  CGAL::IO::read_PLY_with_properties<PointVectorPair>(file, boost::function_output_iterator(lambda),
+    CGAL::make_ply_point_reader(Point_map()),
+    CGAL::make_ply_normal_reader(Normal_map()));
+
+  assert(pv_pairs[0].first == Point_3(1, 1, 1));
+  assert(pv_pairs[1].first == Point_3(3, 3, 3));
+  assert(pv_pairs[2].first == Point_3(5, 5, 5));
+
+  for (std::size_t i = 0; i < pv_pairs.size(); i++) {
+    FT dev = CGAL::abs(1.0 - pv_pairs[i].second.squared_length());
+    assert(dev < 0.01);
+  }
+
+  return 0;
+}

Surface_mesh_deformation/examples/Surface_mesh_deformation/CMakeLists.txt

@@ -33,12 +33,12 @@ if(TARGET CGAL::Eigen3_support)
 
   find_package(OpenMesh QUIET)
   if(OpenMesh_FOUND)
-    include(UseOpenMesh)
+    include(CGAL_OpenMesh_support)
     message(STATUS "Found OpenMesh")
 
     create_single_source_cgal_program("all_roi_assign_example_with_OpenMesh.cpp")
     target_link_libraries(all_roi_assign_example_with_OpenMesh
-                          PRIVATE ${OPENMESH_LIBRARIES} CGAL::Eigen3_support)
+                          PRIVATE CGAL::OpenMesh_support CGAL::Eigen3_support)
   else()
     message(STATUS "NOTICE: Examples that use OpenMesh will not be compiled.")
   endif()

Surface_mesh_deformation/test/Surface_mesh_deformation/CMakeLists.txt

@@ -18,12 +18,12 @@ if(TARGET CGAL::Eigen3_support)
 
   find_package(OpenMesh QUIET)
   if(OpenMesh_FOUND)
-    include(UseOpenMesh)
+    include(CGAL_OpenMesh_support)
     message(STATUS "Found OpenMesh")
 
     create_single_source_cgal_program("Cactus_deformation_session_OpenMesh.cpp")
     target_link_libraries(Cactus_deformation_session_OpenMesh
-                          PRIVATE ${OPENMESH_LIBRARIES} CGAL::Eigen3_support)
+                          PRIVATE CGAL::OpenMesh_support CGAL::Eigen3_support)
   else()
     message(STATUS "NOTICE: Examples that use OpenMesh will not be compiled.")
   endif()