mirror of https://github.com/CGAL/cgal
instrospect-> introspect, minor changes
This commit is contained in:
parent
e7d3c22cb9
commit
44264f1d9f
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@ -449,6 +449,8 @@ Jet_fitting_3/examples/Jet_fitting_3/data/bezierpb3-0.007812.off -text
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Jet_fitting_3/examples/Jet_fitting_3/data/ellipe0.003.off -text
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Jet_fitting_3/examples/Jet_fitting_3/data/venus.off -text
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Jet_fitting_3/examples/Jet_fitting_3/test.off -text
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Jet_fitting_3/test/Jet_fitting_3/blind_1pt.C -text
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Jet_fitting_3/test/Jet_fitting_3/makefile -text
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Kernel_23/doc_tex/Kernel_23_ref/fig/IsoCuboid.eps -text
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Kernel_23/doc_tex/Kernel_23_ref/fig/IsoCuboid.gif -text svneol=unset#unset
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Kernel_23/doc_tex/Kernel_23_ref/fig/IsoCuboid.pdf -text svneol=unset#unset
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@ -46,7 +46,7 @@ QTLDFLAGS = \
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$(CGAL_QT_LDFLAGS) -lGL -lglut
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INTRO_LD_FLAGS=-L$(INTROSPEC_DIR) -lInstrospect
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INTRO_LD_FLAGS=-L$(INTROSPEC_DIR) -lIntrospect
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#---------------------------------------------------------------------#
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# target entries
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@ -1,7 +1,7 @@
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\ccUserChapter{Estimation of local differential properties of sampled
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surfaces via polynomial fitting}
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\label{chap:Jet_fitting_3}
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\ccChapterAuthor{Marc Pouget and Frédéric Cazals}
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\ccChapterAuthor{Marc Pouget and Frederic Cazals}
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\minitoc
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@ -35,8 +35,6 @@ the \ccc{LocalKernel} concept~: \ccc{LocalKernel::FT}.
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% +------------------------------------------------------------------
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\ccNestedType{FT}{The scalar type.}
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\ccGlue
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\ccNestedType{Vector}{The Vector type.}
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\ccGlue
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\ccNestedType{Matrix }{The Matrix type.}
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%\ccCreation
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@ -45,22 +43,28 @@ the \ccc{LocalKernel} concept~: \ccc{LocalKernel::FT}.
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%\ccConstructor{LinAlgTraits();}{default constructor.}
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\ccOperations
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The Matrix has classical access to its elements.
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Usual brackets operator for Vector and Matrix types.
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\ccMethod{void set_elt(size_t i, size_t j, const FT value)}{}
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\ccGlue
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\ccMethod{FT get_elt(size_t i, size_t j)}{}
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\ccMethod{void eigen_symm_algo(Matrix& S, Vector& eval, Matrix&
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The LinAlgTraits has an eigenanalysis and a singular value
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decomposition algorithm.
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\ccMethod{void eigen_symm_algo(Matrix& S, FT* eval, Matrix&
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evec);} {Performs an eigenanalysis of a real symmetric matrix. Eigen
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values are sorted in descending order, eigen vectors are sorted in
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values are sorted in ascending order, eigen vectors are sorted in
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accordance. }
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\ccMethod{void solve_ls_svd_algo(Matrix& M, Vector& X, const Vector&
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B, double &cond_nb);}{ Solves the system MX=B (in the least square
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sense if M is not square) using a Singular Value Decomposition and
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gives the condition number of M.}
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\ccMethod{void solve_ls_svd_algo(Matrix& M, FT* B, FT* cond_nb);}
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{ Solves the system MX=B (in the least square sense if M is not
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square) using a Singular Value Decomposition and gives the condition
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number of M. The solution is stored in B.}
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\ccHasModels
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% +------------------------------------------------------------------
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\ccc{GSL}. See the implementation in the exemple directory
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exemples/Jet\_fitting\_3/GSL.h .
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\ccc{Lapack}. See the implementation in the exemple directory
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exemples/Jet\_fitting\_3/LinAlg\_lapack.h .
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@ -81,65 +81,16 @@ int main(int argc, char *argv[])
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//OUTPUT on outFile
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CGAL::set_pretty_mode(outFile);
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outFile << "vertex : " << in_points[0] << std::endl
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<< "number of points used : " << in_points.size() << std::endl
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<< "origin : " << monge_rep.origin_pt() << std::endl
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<< "d1 : " << monge_rep.d1() << std::endl
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<< "d2 : " << monge_rep.d2() << std::endl
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<< "n : " << monge_rep.n() << std::endl
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<< "cond_nb : " << monge_info.cond_nb() << std::endl
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<< "pca_eigen_vals " << monge_info.pca_eigen_vals()[0]
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<< " " << monge_info.pca_eigen_vals()[2]
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<< " " << monge_info.pca_eigen_vals()[3] << std::endl
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<< "pca_eigen_vecs : " << std::endl
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<< monge_info.pca_eigen_vecs()[0] << std::endl
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<< monge_info.pca_eigen_vecs()[1] << std::endl
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<< monge_info.pca_eigen_vecs()[2] << std::endl
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<< std::endl ;
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if ( d_monge >= 2)
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outFile << "k1 : " << monge_rep.coefficients()[0] << std::endl
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<< "k2 : " << monge_rep.coefficients()[1] << std::endl;
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if ( d_monge >= 3)
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outFile << "b0 : " << monge_rep.coefficients()[2] << std::endl
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<< "b1 : " << monge_rep.coefficients()[3] << std::endl
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<< "b2 : " << monge_rep.coefficients()[4] << std::endl
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<< "b3 : " << monge_rep.coefficients()[5] << std::endl;
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if ( d_monge >= 4)
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outFile << "c0 : " << monge_rep.coefficients()[6] << std::endl
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<< "c1 : " << monge_rep.coefficients()[7] << std::endl
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<< "c2 : " << monge_rep.coefficients()[8] << std::endl
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<< "c3 : " << monge_rep.coefficients()[9] << std::endl
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<< "c4 : " << monge_rep.coefficients()[10] << std::endl;
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<< "number of points used : " << in_points.size() << std::endl;
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monge_rep.dump_verbose(outFile);
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monge_info.dump_verbose(outFile);
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//OUTPUT on std::cout
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//OUTPUT on std::cout
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CGAL::set_pretty_mode(std::cout);
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std::cout << "vertex : " << in_points[0] << std::endl
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<< "number of points used : " << in_points.size() << std::endl
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<< "origin : " << monge_rep.origin_pt() << std::endl
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<< "d1 : " << monge_rep.d1() << std::endl
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<< "d2 : " << monge_rep.d2() << std::endl
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<< "n : " << monge_rep.n() << std::endl
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<< "cond_nb : " << monge_info.cond_nb() << std::endl
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<< "pca_eigen_vals " << monge_info.pca_eigen_vals()[0]
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<< " " << monge_info.pca_eigen_vals()[2]
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<< " " << monge_info.pca_eigen_vals()[3] << std::endl
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<< "pca_eigen_vecs : " << std::endl
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<< monge_info.pca_eigen_vecs()[0] << std::endl
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<< monge_info.pca_eigen_vecs()[1] << std::endl
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<< monge_info.pca_eigen_vecs()[2] << std::endl
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<< std::endl ;
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if ( d_monge >= 2)
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std::cout << "k1 : " << monge_rep.coefficients()[0] << std::endl
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<< "k2 : " << monge_rep.coefficients()[1] << std::endl;
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if ( d_monge >= 3)
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std::cout << "b0 : " << monge_rep.coefficients()[2] << std::endl
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<< "b1 : " << monge_rep.coefficients()[3] << std::endl
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<< "b2 : " << monge_rep.coefficients()[4] << std::endl
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<< "b3 : " << monge_rep.coefficients()[5] << std::endl;
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if ( d_monge >= 4)
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std::cout << "c0 : " << monge_rep.coefficients()[6] << std::endl
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<< "c1 : " << monge_rep.coefficients()[7] << std::endl
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<< "c2 : " << monge_rep.coefficients()[8] << std::endl
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<< "c3 : " << monge_rep.coefficients()[9] << std::endl
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<< "c4 : " << monge_rep.coefficients()[10] << std::endl;
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<< "number of points used : " << in_points.size() << std::endl;
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monge_rep.dump_verbose(std::cout);
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monge_info.dump_verbose(std::cout);
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return 1;
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}
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@ -0,0 +1,65 @@
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#include <CGAL/basic.h>
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#include <CGAL/Cartesian.h>
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#include <stdio.h>
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#include <iostream>
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#include <fstream>
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#include <stdlib.h>
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#include <vector>
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#include "../../include/CGAL/Monge_via_jet_fitting.h"
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#include "include/LinAlg_lapack.h"
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typedef double DFT;
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typedef CGAL::Cartesian<DFT> Data_Kernel;
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typedef Data_Kernel::Point_3 DPoint;
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typedef Data_Kernel::Vector_3 DVector;
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typedef CGAL::Monge_rep<Data_Kernel> My_Monge_rep;
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typedef double LFT;
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typedef CGAL::Cartesian<LFT> Local_Kernel;
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typedef CGAL::Monge_info<Local_Kernel> My_Monge_info;
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typedef CGAL::Monge_via_jet_fitting<Data_Kernel, Local_Kernel, Lapack> My_Monge_via_jet_fitting;
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int main()
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{
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//open the input file
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std::ifstream inFile( "data/in_points_d4.txt", std::ios::in);
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if ( !inFile )
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{
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std::cerr << "cannot open file for input\n";
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exit(-1);
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}
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//initalize the in_points container
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double x, y, z;
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std::vector<DPoint> in_points;
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char ch[40];
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while (inFile >> ch) {
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x = atof(ch);
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inFile >> ch;
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y = atof(ch);
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inFile >> ch;
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z = atof(ch);
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DPoint p(x,y,z);
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in_points.push_back(p);
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}
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inFile.close();
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// fct parameters
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int d_fitting = 4;
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int d_monge = 4;
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My_Monge_rep monge_rep;
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My_Monge_info monge_info;
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//run the main fct
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My_Monge_via_jet_fitting do_it(in_points.begin(), in_points.end(),
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d_fitting, d_monge,
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monge_rep, monge_info);
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monge_rep.comply_wrt_given_normal( -monge_rep.n() );
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//OUTPUT on std::cout
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monge_rep.dump_verbose( std::cout );
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monge_rep.dump_4ogl( std::cout, 1 );
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monge_info.dump_verbose( std::cout );
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std::cout << "success\n";
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}
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@ -0,0 +1,17 @@
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0 0 0
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0 1 .2
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0 -1 0.2
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1 0 0.1
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-1 0 0.1
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1 1 0.3
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-1 1 .3
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-1 -1 .3
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1 -1 .3
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2 0 .4
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0 2 .8
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-2 0 .4
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0 -2 .8
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2 2 1.2
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-2 -2 1.2
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2 -2 1.2
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-2 2 1.2
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@ -0,0 +1,110 @@
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#ifndef _LAPACK_H_
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#define _LAPACK_H_
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#include <stdlib.h>
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#include "blaswrap.h"
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#include "f2c.h"
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extern "C" {
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#include "clapack.h"
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}
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////////////////////////class Lapack_matrix/////////////////////
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//in Lapack, matrices are one-dimensional arrays
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// and elements are column-major ordered
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// this class is a wrapper defining set and get in the usual way
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class Lapack_matrix{
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protected:
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double* m_matrix;
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public:
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size_t nb_rows;
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size_t nb_columns;
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//contructor
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// initializes all the elements of the matrix to zero.
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Lapack_matrix(size_t n1, size_t n2) {
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m_matrix = (double*) calloc (n1*n2, sizeof(double));
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nb_rows = n1;
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nb_columns = n2;
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}
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//destructor
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// ~Lapack_matrix();// { free m_matrix; }
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//access
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const double* matrix() const { return m_matrix; }
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double* matrix() { return m_matrix; }
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void set_elt(size_t i, size_t j, const double value) { m_matrix[j*nb_rows+i] = value; }
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double get_elt(size_t i, size_t j) { return m_matrix[j*nb_rows+i]; }
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};
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//Lapack_matrix::~Lapack_matrix() { free m_matrix; } bug!
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////////////////////////class Lapack/////////////////////
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class Lapack{
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public:
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typedef Lapack_matrix Matrix;
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// solve for eigenvalues and eigenvectors.
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// eigen values are sorted in ascending order,
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// eigen vectors are sorted in accordance.
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static
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void eigen_symm_algo(Matrix& S, double* eval, Matrix& evec);
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//solve MX=B using SVD and give the condition number of M
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static
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void solve_ls_svd_algo(Matrix& M, double* B, double &cond_nb);
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};
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void Lapack::eigen_symm_algo(Matrix& S, double* eval, Matrix& evec)
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{
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char jobz = 'V';
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char range = 'A';
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char uplo = 'U';
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integer n = S.nb_rows,
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lda = S.nb_rows,
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il = 0, iu = 0,
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m = n,
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lwork = 26*n,
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liwork = 10*n,
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info;
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double vl=0, vu=0, abstol = 0;
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integer* isuppz = (integer*) malloc(2*n*sizeof(integer));
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double* work = (double*) malloc(lwork*sizeof(double));
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integer* iwork = (integer*) malloc(liwork*sizeof(integer));
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dsyevr_(&jobz, &range, &uplo, &n, S.matrix(), &lda, &vl, &vu, &il, &iu, &abstol, &m,
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eval, evec.matrix(), &n, isuppz, work, &lwork, iwork, &liwork, &info);
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//clean up
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free(isuppz);
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free(work);
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free(iwork);
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}
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void Lapack::solve_ls_svd_algo(Matrix& M, double* B, double &cond_nb)
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{
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integer m = M.nb_rows,
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n = M.nb_columns,
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nrhs = 1,
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lda = m,
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ldb = m,
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rank,
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lwork = 5*m,
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info;
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//c style
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double* sing_values = (double*) malloc(n*sizeof(double));
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double* work = (double*) malloc(lwork*sizeof(double));
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double rcond = -1;
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dgelss_(&m, &n, &nrhs, M.matrix(), &lda, B, &ldb, sing_values,
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&rcond, &rank, work, &lwork, &info);
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assert(info==0);
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cond_nb = sing_values[0]/sing_values[n-1];
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//clean up
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free(sing_values);
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free(work);
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}
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#endif
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@ -0,0 +1,141 @@
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# Created by the script create_makefile
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# This is the makefile for compiling a CGAL application.
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#---------------------------------------------------------------------#
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# include platform specific settings
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#---------------------------------------------------------------------#
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# Choose the right include file from the <cgalroot>/make directory.
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include $(CGAL_MAKEFILE)
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PROFOPT= -g
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CFLAGS=${PROFOPT}
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#---------------------------------------------------------------------#
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# compiler flags
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#---------------------------------------------------------------------#
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LAPACK_INCDIRS = -I$(LAPACK_DIR)/SRC -I$(LAPACK_DIR)
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CXXFLAGS = \
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-I../../include \
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$(CGAL_CXXFLAGS) \
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$(LONG_NAME_PROBLEM_CXXFLAGS) \
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$(LAPACK_INCDIRS) \
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${CFLAGS}
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#---------------------------------------------------------------------#
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# linker flags
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#---------------------------------------------------------------------#
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F2CDIR = $(LAPACK_DIR)/F2CLIBS
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LAPACK_LDLIBS = $(LAPACK_DIR)/lapack_LINUX.a \
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$(LAPACK_DIR)/blas_LINUX.a $(LAPACK_DIR)/tmglib_LINUX.a \
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$(F2CDIR)/libF77.a $(F2CDIR)/libI77.a -lm -lc
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LIBPATH = \
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$(CGAL_LIBPATH)
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LDFLAGS = \
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$(LONG_NAME_PROBLEM_LDFLAGS) \
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${LAPACK_LDLIBS} \
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$(CGAL_LDFLAGS) \
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#---------------------------------------------------------------------#
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# target entries
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#---------------------------------------------------------------------#
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||||
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all: \
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blind_1pt
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blind_1pt: blind_1pt.o
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$(CGAL_CXX) $(LIBPATH) -o blind_1pt.exe blind_1pt.o \
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$(LDFLAGS)
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rmexe:
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rm *.exe
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clean: \
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blind_1pt.clean
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rmexe
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depend:
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makedepend *.[Ch]
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#---------------------------------------------------------------------#
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# suffix rules
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||||
#---------------------------------------------------------------------#
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.C$(OBJ_EXT):
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$(CGAL_CXX) $(CXXFLAGS) $(OBJ_OPT) $<
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# DO NOT DELETE
|
||||
|
||||
blind_1pt.o: /usr/include/stdio.h /usr/include/features.h
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blind_1pt.o: /usr/include/sys/cdefs.h /usr/include/gnu/stubs.h
|
||||
blind_1pt.o: /usr/include/bits/types.h /usr/include/bits/wordsize.h
|
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blind_1pt.o: /usr/include/bits/typesizes.h /usr/include/libio.h
|
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blind_1pt.o: /usr/include/_G_config.h /usr/include/wchar.h
|
||||
blind_1pt.o: /usr/include/bits/wchar.h /usr/include/gconv.h
|
||||
blind_1pt.o: /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h
|
||||
blind_1pt.o: /usr/include/stdlib.h /usr/include/sys/types.h
|
||||
blind_1pt.o: /usr/include/time.h /usr/include/endian.h
|
||||
blind_1pt.o: /usr/include/bits/endian.h /usr/include/sys/select.h
|
||||
blind_1pt.o: /usr/include/bits/select.h /usr/include/bits/sigset.h
|
||||
blind_1pt.o: /usr/include/bits/time.h /usr/include/sys/sysmacros.h
|
||||
blind_1pt.o: /usr/include/bits/pthreadtypes.h /usr/include/bits/sched.h
|
||||
blind_1pt.o: /usr/include/alloca.h ../../include/CGAL/Monge_via_jet_fitting.h
|
||||
blind_1pt.o: ../../include/CGAL/jet_fitting_3_assertions.h
|
||||
blind_1pt.o: /usr/include/math.h /usr/include/bits/huge_val.h
|
||||
blind_1pt.o: /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h
|
||||
blind_1pt.o: include/GSL.h /usr/include/gsl/gsl_linalg.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_mode.h /usr/include/gsl/gsl_permutation.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_types.h /usr/include/gsl/gsl_errno.h
|
||||
blind_1pt.o: /usr/include/errno.h /usr/include/bits/errno.h
|
||||
blind_1pt.o: /usr/include/linux/errno.h /usr/include/asm/errno.h
|
||||
blind_1pt.o: /usr/include/asm-i386/errno.h /usr/include/gsl/gsl_check_range.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_vector.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_vector_complex_long_double.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_complex.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_vector_long_double.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_block_long_double.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_vector_complex.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_block_complex_long_double.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_vector_complex_double.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_vector_double.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_block_double.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_block_complex_double.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_vector_complex_float.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_vector_float.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_block_float.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_block_complex_float.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_vector_ulong.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_block_ulong.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_vector_long.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_block_long.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_vector_uint.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_block_uint.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_vector_int.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_block_int.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_vector_ushort.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_block_ushort.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_vector_short.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_block_short.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_vector_uchar.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_block_uchar.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_vector_char.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_block_char.h /usr/include/gsl/gsl_matrix.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_matrix_complex_long_double.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_matrix_complex_double.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_matrix_complex_float.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_matrix_long_double.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_matrix_double.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_matrix_float.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_matrix_ulong.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_matrix_long.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_matrix_uint.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_matrix_int.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_matrix_ushort.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_matrix_short.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_matrix_uchar.h
|
||||
blind_1pt.o: /usr/include/gsl/gsl_matrix_char.h /usr/include/gsl/gsl_eigen.h
|
||||
Loading…
Reference in New Issue