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217 Commits

Author SHA1 Message Date
Mael Rouxel-Labbé 3e365756ca Merge branch 'CGAL-Optimal_bounding_box-GF-old' into CGAL-Optimal_bounding_box-GF 2020-03-09 16:54:25 +01:00
Mael Rouxel-Labbé ba1c21f3bd Enhance CGAL::Eigen_matrix 2019-12-09 18:48:46 +01:00
Mael Rouxel-Labbé 127bf54e44 Give Eigen_sparse_matrix its own file 
The idea is that it is clearer that Eigen_matrix exists
 2019-12-09 16:39:19 +01:00
Mael Rouxel-Labbé 51e965e1dc Rewrite most of OBB code to fix design issues and bugs 2019-12-09 12:25:38 +01:00
Mael Rouxel-Labbé b76ce69489 Fix two solvers not showing up in documentation 2019-12-04 12:00:33 +01:00
Mael Rouxel-Labbé cd4123bf2c Clean code (partial) 2019-12-04 11:33:36 +01:00
Mael Rouxel-Labbé edefc616f3 Merge branch 'CGAL-Optimal_bounding_box-GF-old' into CGAL-Optimal_bounding_box-GF 2019-12-03 16:28:19 +01:00
Mael Rouxel-Labbé 9ed1a87905 Merge branch 'CGAL-Optimal_bounding_box-GF-old' into CGAL-Optimal_bounding_box-GF 2019-10-20 20:45:49 +02:00
Sébastien Loriot 52164b1fba First pass on removing license notice in header for LGPL files 2019-10-19 15:40:30 +02:00
Sébastien Loriot 7356421d80 introduce Commercial license SPDX tag 2019-10-19 12:15:19 +02:00
Sébastien Loriot 9bd9c68b83 update LGPL[23]+ and GPL[23]+ SPDX tags 
ack -l --no-svg "SPDX-License-Identifier: GPL-3.0\+" | xargs sed -i "s/SPDX-License-Identifier: GPL-3.0+/SPDX-License-Identifier: GPL-3.0-or-later/"
ack -l --no-svg "SPDX-License-Identifier: LGPL-3.0\+" | xargs sed -i "s/SPDX-License-Identifier: LGPL-3.0+/SPDX-License-Identifier: LGPL-3.0-or-later/"
ack -l --no-svg "SPDX-License-Identifier: GPL-2.0\+" | xargs sed -i "s/SPDX-License-Identifier: GPL-2.0+/SPDX-License-Identifier: GPL-2.0-or-later/"
ack -l --no-svg "SPDX-License-Identifier: LGPL-2.0\+" | xargs sed -i "s/SPDX-License-Identifier: LGPL-2.0+/SPDX-License-Identifier: LGPL-2.0-or-later/"
 2019-10-18 21:57:54 +02:00
Maxime Gimeno 44327dbde8 Hide all implem in #ifndef doxygen_running to silent all doxygen warnings. 2019-07-01 15:05:12 +02:00
Liangliang Nan 0c3c661458 added namespace "CGAL::" to avoid name conflicts. 2019-06-25 14:22:28 +02:00
Liangliang Nan 4588ba5d9d Merge branch 'master' of https://github.com/CGAL/cgal 2019-06-19 15:08:53 +02:00
Liangliang Nan 010f05dfeb find GLPK 
- added FindGLPK.cmake
- try to find SCIP first. If not, try to find GLPK
 2019-06-19 15:02:27 +02:00
Maxime Gimeno b12d59dc4e Fix the test CMakeLists.txt for GLPK 2019-06-13 13:33:53 +02:00
Liangliang Nan 512a429de8 added missing <cmath> in MIP solvers 2019-06-11 16:54:13 +02:00
Liangliang Nan cd673786a5 Use LGPL-3.0+ license (to be consistent with other parts) 2019-06-11 13:58:18 +02:00
Liangliang Nan fadaee63a8 integrated PolyFit 2019-06-05 17:50:37 +02:00
Andreas Fabri e2d19b0c8d Replace NULL and Nullptr_t with nullptr and nullptr_t 2019-06-04 23:45:44 +02:00
Laurent Rineau 7bcad36d7e
Merge branch 'master' into Installation-remove_FindBLAS_LAPACK_TAUCS-GF 2019-05-14 16:03:28 +02:00
Sébastien Loriot db65bd8ecc Merge remote-tracking branch 'cgal/releases/CGAL-4.14-branch' 2019-04-11 21:38:48 +02:00
Sébastien Loriot 2eb411d337 update Eigen links 2019-04-11 21:37:05 +02:00
albert-github 1dd7473818 Correction of links 
Correction of redirected links and links that moved to another place.
 2019-04-11 21:37:05 +02:00
Simon Giraudot d8b51a9672 Merge remote-tracking branch 'laurent/Installation-remove_FindBLAS_LAPACK_TAUCS-GF' into Installation-remove_FindBLAS_LAPACK_TAUCS-GF 2019-04-09 15:22:45 +02:00
Sébastien Loriot 124012d9f9 replace cpp11::array by std::array 2019-03-29 13:28:33 +01:00
Simon Giraudot 911bea4021 Remove Lapack support from Jet_fitting, PSP, Ridges and Solver_interface 2019-03-08 09:53:21 +01:00
Sébastien Loriot a5576cd3fb replace markdown subsections by \cgalHeading 2019-02-14 10:53:48 +01:00
Maxime Gimeno 2a49dfcb05 Fix conflict 2019-01-11 09:47:34 +01:00
Andreas Fabri 047938e068 Try to fix warnings (which I cannot reproduce locally) 2018-11-26 10:00:23 +01:00
Sébastien Loriot db87cc916c add missing namespace 2018-11-14 18:59:36 +01:00
Sébastien Loriot e0c5a25316 fix concept 2018-11-13 21:47:08 +01:00
Sébastien Loriot 1d04a47326 use and document Index type 2018-11-13 21:26:00 +01:00
Sébastien Loriot 67d75ec6db fix warning 
init array in case of failure to diagonalize
 2018-11-13 08:48:09 +01:00
Andreas Fabri 5b62f06871 Fix merge conflicts 2018-11-12 13:02:52 +01:00
Andreas Fabri 38bd4bd2b6 Don't resize() as that assembles the matrix and makes add_coef() slow 2018-10-30 12:09:43 +01:00
Laurent Rineau 821f9c015e Merge pull request #3311 from sloriot/Doc-Pkg_link_name 
Update the name of package names reference links
 2018-10-29 10:27:53 +01:00
Sébastien Loriot 72acbee3f5 fix warnings 2018-10-24 11:12:55 +02:00
Sébastien Loriot a2d0c406a7 add an option to disable the warning 2018-10-18 16:36:17 +02:00
Sébastien Loriot 2f9408f867 rename link name to match package name 2018-10-08 10:28:55 +02:00
Sébastien Loriot a2e8a1c68f add the suffix Ref to doxygen link to reference 2018-10-08 10:26:56 +02:00
Andreas Fabri e7740e16e8 Add example with free function and reorder sections in manual 2018-09-11 17:32:53 +02:00
Andreas Fabri 3580b5a511 Move code into the trahts class 2018-09-05 14:56:07 +02:00
Andreas Fabri d336746cd1 bug fix 2018-09-04 18:06:57 +02:00
Andreas Fabri 4e6293d940 Switch to CGAL::Eigen_matrix 2018-09-04 17:48:42 +02:00
Simon Giraudot 41d554fe58 Deprecating Diagonalize_traits: document dependency to Eigen 2018-06-19 10:57:55 +02:00
Simon Giraudot 4599787d67 Improve deprecated message 2018-06-19 10:57:55 +02:00
Simon Giraudot c0da4fcef5 Warn against using CGAL diagonalize traits 2018-06-19 10:57:55 +02:00
Konstantinos Katrioplas 7803481af9 requested changes: impoving API with default Linear algebra traits, better use of template parameters at free functions, prefer using convex hull overload which does not depend on the kernel. 2018-06-11 14:46:56 +02:00
Konstantinos Katrioplas ca1d427dc5 remove mutable and fix small typo 2018-06-11 14:46:55 +02:00
Konstantinos Katrioplas 00c782b277 documentation 2018-06-11 14:46:55 +02:00
Konstantinos Katrioplas 0c215dfecb use a matrix with dynamic rows and columns are run time for points, because it is a little faster than fixed columns 2018-06-11 14:46:55 +02:00
Konstantinos Katrioplas 820e9c6098 return precompiled 3-column row only & some cleaning 2018-06-11 14:46:55 +02:00
Konstantinos Katrioplas aac227eed4 small errors 2018-06-11 14:46:54 +02:00
Konstantinos Katrioplas bb284396d2 benchmark code and benchmark on fitness function 2018-06-11 14:46:54 +02:00
Konstantinos Katrioplas 819e38d6a1 making sure that all matrix allocations happen at compile time when possible 2018-06-11 14:46:54 +02:00
Konstantinos Katrioplas 63e1a12924 clear warnings & clean eigen eigen linear algrebra traits 2018-06-11 14:46:54 +02:00
Konstantinos Katrioplas 5380ebac1b eigen linear algebra traits 2018-06-11 14:46:54 +02:00
Konstantinos Katrioplas 2571c7719e abstract interface for eigen dense matrix 2018-06-11 14:46:53 +02:00
Sébastien Loriot 704fe9563b do not use uppercase name for variables 2018-02-16 14:15:02 +01:00
Sébastien Loriot 0698f79aff add SPDX identifier for files under the LGPL-3+ license 2017-11-12 10:17:50 +01:00
Mael Rouxel-Labbé 969435d37d Merge branch 'master' into Solver_interface-fix_doc-GF 2017-10-13 17:14:16 +02:00
Mael Rouxel-Labbé a8faf16b00 Fixed infinite recursive call 2017-10-08 00:32:09 +02:00
Mael Rouxel-Labbé 7e3ed29e94 Improved solver_interface's documentation 2017-10-08 00:22:13 +02:00
Mael Rouxel-Labbé 908c2eb63a Readability changes (no real changes) 
- Made indentation coherent across the whole package
- Fixed EOL whitespace
 2017-10-07 20:59:32 +02:00
Andreas Fabri f7977614ce Move documentation to the header files in include/CGAL/ 2017-10-03 14:02:15 +01:00
konstantinos katrioplas e4598c3f8e handle multiple values at the same position & symmetric matrices 2017-09-30 16:05:28 +03:00
konstantinos katrioplas cd1d9ff439 return 0 if value hasn't changed 2017-09-27 18:28:09 +03:00
konstantinos katrioplas 900e37dc79 simple loop 2017-09-27 17:32:31 +03:00
konstantinos katrioplas a702e83ee5 doc on time complexity 2017-09-27 15:26:06 +03:00
konstantinos katrioplas f2af36d34f method works without matrix having been built 2017-09-27 15:17:20 +03:00
konstantinos katrioplas 551c066ddd add missing get_coef method 2017-09-27 00:31:41 +03:00
Laurent Rineau bedd1cf1b5 Merge branch 'releases/CGAL-4.10-branch' into releases/CGAL-4.11-branch 2017-09-08 17:38:04 +02:00
Andreas Fabri ded5764399 No need for EIGEN_YES_I_KNOW_SPARSE_MODULE_IS_NOT_STABLE_YET as it IS stable now 2017-09-06 11:19:25 +01:00
Mael Rouxel-Labbé 262b24a87b Fixed Eigen_vector's dimension() returning an Eigen::Index and not int 2017-06-23 10:33:51 +02:00
Sébastien Loriot 8dab03e8e9 Merge pull request #1720 from sgiraudot/Solver_interface-Enhance_eigen_diagonalize-GF 
Use faster Eigen implementation for diagonalization
 2017-01-02 19:10:19 +01:00
Andreas Fabri e5a3088f2c Static cast to avoid warning 2016-12-16 09:15:20 +01:00
Simon Giraudot c81a2dd975 Use faster Eigen implementation for diagonalization 2016-11-24 14:58:45 +01:00
Andreas Fabri 3c375d7cb7 Fix package Periodic_2_Triangulation_2 2016-09-30 15:22:27 +02:00
Sébastien Loriot 27d605d636 add missing include directives 2016-08-26 09:28:35 +02:00
Sébastien Loriot 067ead94a1 fix headers 2015-10-09 10:48:06 +02:00
Simon Giraudot 394f0e701a New typedefs in DiagonalizeTraits 2015-10-01 16:03:25 +02:00
Simon Giraudot 619554a20b Replace SparseLinearAlgebraTraitsWithFactor_d by SparseLinearAlgebraWithFactorTraits_d 2015-09-16 17:23:00 +02:00
Simon Giraudot a4f242a0cc Replace Internal_diagonalize_traits by Diagonalize_traits + corrections in Concepts/Models 2015-09-16 11:41:26 +02:00
Simon Giraudot 136de97318 Bugfix: DiagonalizeTraits now really returns largest eigenvalue + inversion of parameters in voronoi_covariance is corrected. 2015-09-04 16:01:46 +02:00
Simon Giraudot dd271ecca5 Revert "Bugfix: function extract_largest_(...) is now called extract_smallest_(...) to be consistent with what is actually extracted." 
This reverts commit 8410aab93c.
 2015-09-04 15:13:57 +02:00
Simon Giraudot 8410aab93c Bugfix: function extract_largest_(...) is now called extract_smallest_(...) to be consistent with what is actually extracted. 2015-09-03 18:55:19 +02:00
Simon Giraudot 0875fa17ff Wrapper to automatically use Eigen_diagonalize if Eigen is available or Internal_diagonalize otherwise 2015-08-31 10:01:01 +02:00
Simon Giraudot bb0d1c7b32 Removed unused eigen_symmetric API files 2015-08-31 09:32:15 +02:00
Simon Giraudot 28e5432c16 Renaming 'VCM' to 'diagonalize' 2015-08-31 08:30:01 +02:00
Simon Giraudot 8a46d3cd5e Include Lapack svd in Solver interface (another model for SvdTraits) 2015-08-26 14:49:27 +02:00
Simon Giraudot 4737c1169b Replace template name "degree" by "dim" 2015-08-25 16:16:09 +02:00
Simon Giraudot 02c9847518 Add unsigned int template to VCM_traits so that matrices of dimension other than 3 can be diagonalized 2015-08-25 15:12:44 +02:00
Simon Giraudot 700684f0ff New file Internal_vcm_traits.h (aim at replacing eigen.h in PCA package) 2015-08-25 11:55:27 +02:00
Simon Giraudot a3bcd62a42 Make Eigen_vcm_traits template of floating types with static_casts for Eigen conversion 2015-08-21 09:16:46 +02:00
Simon Giraudot 9e0e0b7c8a Add function to diagonalize covariance matrix AND recover eigenvectors 2015-08-20 16:45:04 +02:00
Simon Giraudot abf9063561 Move Eigen_vcm_traits.h to Solver package 2015-08-20 16:43:58 +02:00
Simon Giraudot 942907957d Move eigen files from PCA (note: this is internal code from CGAL that should be replaced by Eigen) 2015-08-20 16:11:33 +02:00
Simon Giraudot 89bb821611 Remove duplicated file (.h + .hpp) 2015-08-20 16:04:53 +02:00
Simon Giraudot af8e73750c Merge branch 'CGAL-Solver-package-GF-old' into CGAL-Solver-package-GF 2015-08-20 11:51:34 +02:00