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825 Commits

Author SHA1 Message Date
Laurent Rineau 75067bd072 Fix several I/O issues with Apple-clang-3.2 and its libc++ 2013-10-11 16:12:02 +02:00
Laurent Rineau 21abdd09ed Merge remote-tracking branch 'origin/Algebraic_kernel_d-RS_remove_release_warnings' 
- Remove warnings in include/CGAL/RS

Tested in CGAL-4.3-Ic-194
 2013-10-09 14:49:45 +02:00
Laurent Rineau 1213dfbc0b Merge remote-tracking branch 'origin/Algebraic_kernel_d-split_tests-GF' 
- Split several test files of Polynomial, Algebraic_kernel_d, and
  Number_types into multiple test files, to avoid heap overflows of VC++.

Tested in CGAL-4.3-Ic-194
 2013-10-09 14:29:02 +02:00
Luis Peñaranda 34485ce89d removed unused variables in release from rs calls 2013-10-04 15:32:04 -03:00
Luis Peñaranda d53c137525 removed unused variables in release from dyadic.h 2013-10-04 15:31:27 -03:00
Laurent Rineau 67a3824cec Change permissions of files created by Andreas 2013-10-04 16:57:11 +02:00
Laurent Rineau d64828378d Merge remote-tracking branch 'origin/Algebraic_kernel_d-RS_remove_leading_underscores-penarand' 
Approved by the Release Manager, for CGAL-4.3
Tested in CGAL-4.3-Ic-188.
 2013-10-03 17:05:48 +02:00
Andreas Fabri f37d2940b6 split one testcase as VC++ suffers from a combinatorial explosion 2013-09-25 15:04:35 +02:00
Luis Peñaranda 5c74f47533 bugfix in polynomial converter 2013-09-24 17:36:42 -03:00
Luis Peñaranda f4ddb0eeb5 removed leading _ from polynomial interface 2013-09-19 16:55:54 -03:00
Luis Peñaranda 1f91465c32 removed leading _ from polynomial converter 2013-09-19 16:22:55 -03:00
Luis Peñaranda 7481e18eae remove leading underscores from isolator interface 2013-09-19 16:15:23 -03:00
Luis Peñaranda 44117e0ae2 removed leading underscores from memory interface 2013-09-19 16:08:40 -03:00
Luis Peñaranda 615fdb7905 remove leading underscores from class algebraic_1 2013-09-19 16:00:19 -03:00
Luis Peñaranda 81434d69fc corrected typo 2013-09-19 15:43:28 -03:00
Luis Peñaranda 9f45c20123 changed c-style to c++-style comments 2013-09-19 15:37:59 -03:00
Luis Peñaranda f92dc1c904 removed leading underscores from template names 2013-09-19 13:30:45 -03:00
Andreas Fabri 6c547e5663 Mainly added includes 2013-09-13 22:24:30 +02:00
Michael Hemmer 11c8477dec fixed doxygen issue 2013-08-21 16:09:14 +02:00
Laurent Rineau bc03aaf30b Put doc/ in the global dont_submit file 2013-08-20 10:57:03 +02:00
Sébastien Loriot d282ade623 use \cgalCite instead of \cite 
using perl -i -pe 's/\\cite\s*{?([a-zA-Z0-9:-]+)}?/\\cgalCite{$1}/g'
 2013-08-05 18:25:26 +02:00
Sébastien Loriot 2dfe8a3d73 workaround for a doxygen bug: remove space after /!* to avoid a verbatim env 
this happens if you have an empty line or the text directly after /!*
to find them in the generated documentation, grep for "pre class=\"fragment\""
(a few of them are legitimate however)
 2013-07-25 14:58:53 +02:00
Sébastien Loriot d4d9bc212b replace in the doc \R by \mathbb{R} 
\R is not a valid latex command
I used: sed -i 's/\\f$\s*\\R/\\f$ \\mathbb{R}/g'
 2013-07-10 17:07:43 +02:00
Sébastien Loriot 716f87d2d7 rename Hidden_type to unspecified_type and update its description 2013-06-13 18:48:58 +02:00
Ross Hemsley 4d9caf3763 Added names that were missing into the Doxyfile.in entries. 
Also modified Installation/CMakeLists.txt to push the version number variable to the parent level
so that it can be accessed by the documentation
 2013-05-30 17:55:43 +02:00
Philipp Möller 4d469821f7 Generated Doxyfile.in and dependencies 2013-05-30 14:13:47 +02:00
Sébastien Loriot 7e15467c72 new cgal doxygen advanced macro to put the text inside a div 2013-05-27 19:36:33 +02:00
Laurent Rineau b6ffa7c425 Merge branch 'CGAL-fix_warnings-GF' 
That branch was successfully tested in CGAL-4.2-Ic-205.
 2013-03-27 12:23:31 +01:00
Andreas Fabri 0cbc8b0e40 remove unused parameters 2013-03-23 08:45:06 +01:00
Sébastien Loriot 9fcf46e11a replace CGAL_[kernel/qpe/triangulation/]_assertion by assert in tests 
this should be the case, following our guidelines.

using:
find */test/* -name '*.[hc]*' | xargs sed -i 's/CGAL_assertion/assert/g'
 2013-03-21 10:50:55 +01:00
Sébastien Loriot 7e59c14580 add a header to classified reference pages using a doxygen macro 2013-03-12 14:33:49 +01:00
Laurent Rineau 2d8da664a3 Merge branch 'CGAL-fix_warnings-gdamiand' 
Conflicts:
	.gitignore
	Skin_surface_3/examples/Skin_surface_3/CMakeLists.txt
 2013-02-22 13:02:37 +01:00
Laurent Rineau 5668111b3d Do not use 'offsetof' on non-POD 
That fixes the following commit:

  | commit ae3602cb5d
  | Author: Andreas Fabri <andreas.fabri@geometryfactory.com>
  | Date:   Thu Feb 14 12:09:18 2013 +0100
  |
  |     Don't use BOOST_MULTI_INDEX_MEMBER
  |
 2013-02-20 16:44:02 +01:00
Laurent Rineau 26a7e70785 New license.txt files (eol changes) 
The new version 2.13.0 of licensecheck has changed the spaces at eol.
 2013-02-19 16:46:39 +01:00
Andreas Fabri 4bbc6ddd39 static_casts, switching to size_t, comparing a pointer with NULL to avoid warnings 2013-02-15 09:27:15 +01:00
Andreas Fabri ae3602cb5d Don't use BOOST_MULTI_INDEX_MEMBER 2013-02-14 12:09:18 +01:00
Andreas Fabri 28b5b64347 no need for a variable for the exception 2013-02-12 19:17:36 +01:00
Andreas Fabri 64787d9b73 use bool instead of int 2013-02-12 19:16:01 +01:00
Laurent Rineau 51ea960be6 Fix warnings about unused types or variables. 2013-02-08 16:50:02 +01:00
Laurent Rineau d19578725b Fix warnings 2013-02-07 18:15:23 +01:00
Sébastien Loriot 716d6f03de fix linking error and a typo in nested type name 2013-01-31 18:19:26 +01:00
Andreas Fabri a26af0e454 remove unused variable in an example 2013-01-23 15:57:53 +01:00
Sébastien Loriot 91745e7ccf fix linking 2013-01-07 20:43:56 +01:00
Sébastien Loriot 95d48245e1 add classified ref man for Algebraic Kernel 2013-01-07 14:45:28 +01:00
Philipp Möller 6e595d4e7c Missing namespaces for linking to Algebraic_kernel 2012-12-21 14:14:04 +01:00
Sébastien Loriot 4c8c87f241 Merge branch 'remove_cpp0x' 2012-12-21 08:36:26 +01:00
Eric Berberich eb11ded35e packages for which I do maintenance stuff 2012-12-20 10:56:08 +01:00
Sébastien Loriot 82b2ebc865 apply the cpp0x namespace renaming in all files 2012-12-19 11:33:17 +01:00
Philipp Möller 75f69570dc Change the titles of mainpages to "User Manual" 
This leads to a slightly odd result in the search for "User Manual",
but makes the pages themselves more consistent.
 2012-12-13 14:47:09 +01:00
Philipp Möller 1adf441b18 Convert all CRLF files to LF 2012-12-03 18:44:24 +01:00
Andreas Fabri c2564ca24e improve illustration 2012-12-02 22:42:19 +01:00
Sébastien Loriot 9576be3c3b add doc in dont_submit 2012-11-27 08:42:02 +01:00
Sébastien Loriot ae8362b7d6 replace \cgalModels ::FOO by \cgalModels `FOO` 
using:
 perl  -pi -e 's/\\cgalModels\s+::([A-Za-z0-9_:]+)\s*$/\\cgalModels `$1`\n/'
 2012-11-23 09:37:53 +01:00
Andreas Fabri 625f9f6cd7 after git merge remotes/origin/hot-fixes-for-Git 2012-11-20 13:02:17 +01:00
Sébastien Loriot 0f69c2a512 remove cpp0x namespace from documentation pages 2012-11-14 16:16:15 +01:00
Sébastien Loriot 8d741d504d remove % in section name 2012-11-14 16:10:15 +01:00
Sébastien Loriot 128b02abb8 update CGAL custom doxygen macros 
corresponds to a run of the script Documentation/conversion_tools/rename_macros.sh
+manual edit of doxyassist.xml and pkglist_filter.py
 2012-11-14 00:31:05 +01:00
Sébastien Loriot ae159cbdf3 replace markup #, ##, ### by \section, \subsection and \subsubsection 
(script replacement)
 2012-11-06 22:02:15 +00:00
Andreas Fabri 7a6634b5a7 No need for CGAL:: in user manuals 2012-10-31 20:11:16 +00:00
Andreas Fabri 59877a8d52 linking and unlinking 2012-10-30 13:40:03 +00:00
Philipp Möller 31a3c07418 Turn \refines :: into \refines `X` globally 2012-10-25 09:48:39 +00:00
Philipp Möller 31e9eadf8b Fix all PackageDescriptions to a newer layout 2012-10-19 15:52:31 +00:00
Philipp Möller 36b8516419 Missing examples 2012-10-09 16:46:42 +00:00
Michael Hemmer 8cfa1699a3 update email 2012-10-09 11:52:16 +00:00
Philipp Möller bc48dfe5a0 Be consistent about author/authors 2012-10-03 16:40:16 +00:00
Philipp Möller c9fdbf3edb Add an anchor to each level one heading, so we get a nice tree in the 
user manuals.
 2012-10-02 11:53:01 +00:00
Philipp Möller 37778547bf Fix example to point to paths similar to a flat layout 2012-10-01 18:02:44 +00:00
Eric Berberich 177fa5f3ed reduce running time 
at some point we need to allow expensive tests
 2012-09-27 21:47:48 +00:00
Philipp Möller 9d96057636 Add PkgDependsOn to the package summary 2012-09-27 11:13:37 +00:00
Philipp Möller b64ba48134 The changes to move the package overview labels into the 
PackageDescription.
 2012-09-25 17:17:49 +00:00
Luis Peñaranda fc95783370 fix bug in refinement with very small precisions 2012-09-25 14:33:19 +00:00
Eric Berberich 6fe1a41fa3 for approximation there were too few tests and some were not correct 
Alex and I improved the tests for approximation of algebraic reals:
- more polynomials (with small and large constant and quadratic coefficient)
- added a root really close to zero
- test all roots of polynomial
- added many precisions (including exotic ones)
Known issue: RS kernel has problem with prec = 8
 2012-09-21 14:07:30 +00:00
Philipp Möller 0aa7cd1c3b Global heading reduction. Rename some Parameter section to Template 
Parameters. Fix dependencies.
 2012-09-21 09:42:24 +00:00
Andreas Fabri accee5c864 unlink,link, autotoc 2012-09-21 07:23:45 +00:00
Philipp Möller e54098fb57 Throw out left over Classified files and move their content if 
necessary.
 2012-09-20 16:29:19 +00:00
Philipp Möller 1954eff3d6 * build normalized mainpage anchors 
* better naming for Pkg commands
* User and Reference Manual links from the PackageOverview
 2012-09-20 15:30:03 +00:00
Philipp Möller 6783a9410b Added Algebraic_kernel_d doc. 2012-09-18 10:32:13 +00:00
Luis Peñaranda 98ea5fbe8f removed useless pointers from algebraic numbers 2012-08-24 14:14:19 +00:00
Luis Peñaranda 760211da15 allocate space for endpoints before refinement, in some cases 2012-08-23 18:16:41 +00:00
Luis Peñaranda a97e6329a0 improved algebraic number comparison 2012-08-23 18:16:37 +00:00
Laurent Rineau 2db4effa7e CMake: Fix the handling of cmake_policy 
That is a followup-to my commit last year:
  | ------------------------------------------------------------------------
  | r63198 | lrineau | 2011-04-28 19:45:22 +0200 (Thu, 28 Apr 2011) | 5 lines
  | 
  | Try to fix my last revision about cmake_policy, with CMake-2.6.x
  | 
  | CMake gives an error if one tries to use cmake_policy(VERSION x.y.z) if
  | x.y.z is greater than the current CMake version.
  | 
  | ------------------------------------------------------------------------

The following check:
  if("${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION}" VERSION_GREATER 2.6)
is useless just after a call to:
 cmake_minimum_required(VERSION 2.6.2)



The script used to fix that was:


#!/usr/bin/env perl

$replacement=<<'END';
if("${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION}.${CMAKE_PATCH_VERSION}" VERSION_GREATER 2.8.3)
  cmake_policy(VERSION 2.8.4)
else()
  cmake_policy(VERSION 2.6)
endif()
END

while(<>) {
    if(/if\("\${CMAKE_MAJOR_VERSION}.\${CMAKE_MINOR_VERSION}" VERSION_GREATER 2.6\)/) {
        while(<>) {
            if(/^endif\(\)/) {
                print "$replacement";
                while(<>) {
                    print;
                }
                exit 0
            }
        }
    }
    print;
}
 2012-08-22 12:35:03 +00:00
Laurent Rineau acf789673e Bad ordering of MPFI and RS3: MPFI can be removed. 2012-08-02 10:32:33 +00:00
Laurent Rineau db194534c7 First big patch to fix -Wunused-local-typedefs 
-Wunused-local-typedefs is a new warning flag of gcc-4.7, and it will enabled
 by -Wall since gcc-4.8 (not yet released).

The fix is a big set of removals of unused typedefs (or comments, or moves,
depending on the context).
 2012-08-01 13:29:16 +00:00
Luis Peñaranda faedebaba5 added flag to use ugcd 2012-07-19 15:46:15 +00:00
Luis Peñaranda 7b2ddd3188 avoided some link errors in gcd implementation 2012-07-18 19:20:54 +00:00
Eric Berberich f87bbe2479 cleanup code as indicated by compiler warnings 2012-07-08 10:47:58 +00:00
Eric Berberich 029e99d1cc remove compiler warnings 2012-07-06 07:06:28 +00:00
Eric Berberich 0a8afa0474 wrong variable name 2012-07-06 07:05:27 +00:00
Eric Berberich 4a01a46f44 RS3 suffices 
the problem was in handling of CGAL_UseRS(3).cmake
 2012-07-05 18:32:25 +00:00
Eric Berberich f39a7b7658 use RS, too 2012-07-05 18:06:04 +00:00
Eric Berberich 230919c8d6 remove compiler warnings in tests 2012-07-05 09:50:20 +00:00
Eric Berberich b5a4e941fd the mandatory libs need an particular order, and we simplify with a macro 2012-06-29 09:24:19 +00:00
Eric Berberich d9ee1cc88b use new style 2012-06-21 22:02:19 +00:00
Eric Berberich 3fde316a6c added CGAL_ENABLE_PRECONFIG (the default value has to be determined) 2012-06-20 11:16:17 +00:00
Eric Berberich 42799e2a39 merge from next 2012-05-21 09:23:32 +00:00
Eric Berberich 3c3372bf60 fixes if RS3 is not available 2012-03-29 13:44:24 +00:00
Eric Berberich af10650852 make functions inline in order to work with multiple compile objects 
avoids linking error "duplicate symbols"
 2012-03-20 13:09:04 +00:00
Eric Berberich 832c6c02e7 merge from next; installation.tex got major changes 2012-01-23 13:54:58 +00:00
Michael Hemmer c153408f14 remove warnings 2012-01-18 11:56:04 +00:00
Laurent Rineau a37c74d534 Add license files, per package 2012-01-16 15:54:22 +00:00