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436 Commits

Author SHA1 Message Date
Simon Giraudot 7518d5642a Remove CGAL::Classification::RGB_Color and HSV_Color and just use CGAL::Color everywhere 2019-04-03 11:51:29 +02:00
Sébastien Loriot 1c119aec44 replace cpp11::unordered_FOO by std::unordered_FOO 2019-03-29 13:28:33 +01:00
Sébastien Loriot 124012d9f9 replace cpp11::array by std::array 2019-03-29 13:28:33 +01:00
Sébastien Loriot d60f5645aa replace BOOST_FOREACH by c++ ranged-based for loop 
some of the command used for the replacement:
ack --cpp  BOOST_FOREACH -l  | xargs sed -i -E "s/BOOST_FOREACH\(([a-zA-Z_:&0-9]+)\s(\w+)\,/for(\1 \2 :/"
ack --cpp  BOOST_FOREACH -l  | xargs sed -i -E "s/BOOST_FOREACH\((const [a-zA-Z_:&0-9]+)\s(\w+)\,/for(\1 \2 :/"
ack --cpp  BOOST_FOREACH -l  | xargs sed -i -E "s/BOOST_FOREACH\((const typename [a-zA-Z_:&0-9]+)\s(\w+)\,/for(\1 \2 :/"
ack --cpp  BOOST_FOREACH -l  | xargs sed -i -E "s/BOOST_FOREACH\((typename [<>a-zA-Z_:&0-9]+)\s(\w+)\,/for(\1 \2 :/"
ack "boost/foreach.hpp" -l --cpp | xargs sed -i '/boost\/foreach.hpp>/d'
 2019-03-29 13:22:15 +01:00
Andreas Fabri a472c24185 http:/www.boost.org -> https://www.bost.org 2019-03-20 08:59:22 +01:00
Andreas Fabri 7c2674abc8 More links fixed 2019-03-20 08:38:40 +01:00
Laurent Rineau f5836b2206 Merge branch 'releases/CGAL-4.13-branch' 2019-03-07 14:31:16 +01:00
Laurent Rineau 99fe1bc548 Merge branch 'releases/CGAL-4.12-branch' into releases/CGAL-4.13-branch 2019-03-07 14:26:47 +01:00
Simon Giraudot b0f16ee41d Handle border case where xmax and ymax exact values should be used 2019-03-04 10:17:52 +01:00
Simon Giraudot c41b73fd2a Fix bbox precision and add assertion test 2019-03-04 09:26:34 +01:00
Laurent Rineau 8693f95dac Merge pull request #3619 from albert-github/feature/bug_headers 
Update of headers
 2019-02-22 16:39:09 +01:00
Andreas Fabri f3c5d11884 Don't suppress warnings 2019-02-18 08:40:08 +01:00
Sébastien Loriot 59bc453b42 first batch of replacement for level 1 in classified ref man 
command used:
grep -l  "##" */doc/*/PackageDescription.txt | xargs  sed -i  -E 's/\#\#\s*([[:print:]]+[[:alnum:]])\s*\#\#\s*$/\\cgalCRPSection{\1}/'
 2019-02-14 10:32:39 +01:00
Laurent Rineau 962afbfade Merge pull request #3343 from sgiraudot/Point_set_3-v2-GF 
[Small Feature] Point Set 3 v2
 2019-02-13 15:38:53 +01:00
Laurent Rineau 1a45e1c753 Merge pull request #3535 from sgiraudot/Classification-Neural_network_and_parallelized_random_forest-GF 
[Small Feature] Classification: Neural Network and parallelized Random Forest
 2019-02-07 13:31:20 +01:00
Laurent Rineau 2f002971e4 Merge pull request #3653 from sgiraudot/Classification-Fix_OpenCV_Qt5_bug-GF 
Classification: Remove useless full find_package for OpenCV
 2019-02-07 13:30:49 +01:00
Simon Giraudot c43ebbad8d Propagate API change to classification test 2019-02-07 11:36:05 +01:00
Simon Giraudot f3dc5f1de7 Remove useless full find_package for OpenCV 2019-02-01 09:13:36 +01:00
Simon Giraudot fb63d960e8 Update doc based on reviews 2019-01-25 09:32:32 +01:00
Simon Giraudot c81fbe4688 Move all classifiers based on other libraries to dedicated namespaces 2019-01-07 11:50:02 +01:00
Simon Giraudot 3cc1b995be Merge remote-tracking branch 'mine/Classification-Neural_network_and_parallelized_random_forest-GF' into Classification-Neural_network_and_parallelized_random_forest-GF 2018-12-21 10:31:00 +01:00
Simon Giraudot 777f63d038 Fix warnings 2018-12-20 14:22:51 +01:00
Laurent Rineau a553357562 Merge pull request #3490 from afabri/CGAL-VC2017_deprecated_warnings-GF 
CGAL  Suppress VC2017 deprecation warnings concerning boost
 2018-12-19 16:12:20 +01:00
Simon Giraudot 394746a75d Fix typos from review 2018-12-18 16:18:08 +01:00
Simon Giraudot b79fef9cc8 Update number of feature generated in assertion (3 new features * 5 scales) 2018-12-18 10:47:49 +01:00
Simon Giraudot 74084d1246 Add missing includes 2018-12-13 15:48:39 +01:00
Simon Giraudot 35511bae8e Document changes in internal ETHZ random forest library 2018-12-12 09:41:05 +01:00
Simon Giraudot 4e1212b07d Unify default radius parameters values 2018-12-12 09:32:23 +01:00
Simon Giraudot eeed92c94d Fix usage of concept Range (no resize() method, size should be taken care of by the user 2018-12-12 09:16:57 +01:00
Simon Giraudot ae169b9f9a Update user manual 2018-12-12 08:59:58 +01:00
Simon Giraudot 34aa9a5290 Document tensorflow classifier + example 2018-12-11 16:32:04 +01:00
Simon Giraudot 6901935aec Add new features based on local height 2018-12-11 15:02:27 +01:00
Simon Giraudot 7ac0eccbb9 Add function to copy random forest classifier 2018-12-11 12:52:37 +01:00
Simon Giraudot c0897c29bf Document new features of Random Forest 2018-12-11 12:39:05 +01:00
Simon Giraudot 7d43e87716 Add warning about scope definition of feature generators 2018-12-11 12:11:00 +01:00
Simon Giraudot f2f919c6bd Add option to change name of label 2018-12-11 11:44:11 +01:00
Simon Giraudot 7f17f352d9 Fix bug + improve radius values 2018-12-07 10:42:08 +01:00
Simon Giraudot e86777c8dc Reduce max memory used 2018-12-06 14:59:57 +01:00
Simon Giraudot 2145a29297 Optimizations for random forest training algorithm 2018-12-06 14:59:57 +01:00
Simon Giraudot fd1c923f6f Add method to get feature usage 2018-12-06 14:59:57 +01:00
Simon Giraudot 0108fa4436 Parallelize random forest training algorithm 2018-12-06 14:59:57 +01:00
Simon Giraudot ebac827658 Improve bagging algorithm (30% gain on training timing) 2018-12-06 14:59:57 +01:00
Simon Giraudot 58a6c4cc2f Specialize TensorFlow classifier for GPU processing 2018-12-06 14:59:57 +01:00
Simon Giraudot 335375dbba Fix verbosity 2018-12-06 14:59:57 +01:00
Simon Giraudot 826fb15b37 Add possibility to do 3D image instead of 2D 2018-12-06 14:59:57 +01:00
Simon Giraudot ec520f57d5 More improvements using better optimizer 2018-12-06 14:59:57 +01:00
Simon Giraudot 21b0b0ee81 Much better version of NN with IO functions 2018-12-06 14:59:57 +01:00
Simon Giraudot f520f9eb11 First version of NN with TensorFlow 2018-12-06 14:59:57 +01:00
Simon Giraudot 642aea115a Add variant of classify() to get detailed output 2018-12-06 14:59:56 +01:00
Andreas Fabri d2c5e1c210 Suppress warning concerning td::fpos::seekpos() 2018-11-28 13:29:19 +01:00
Sébastien Loriot 3a1516e940 add missing Reference and uniformize ref man group declaration 2018-11-20 13:47:16 +01:00
Guillaume Damiand 7d406fbb9c
Merge branch 'master' into CGAL-cmake_cleanup-gdamiand 2018-11-05 07:32:58 +01:00
Laurent Rineau 821f9c015e Merge pull request #3311 from sloriot/Doc-Pkg_link_name 
Update the name of package names reference links
 2018-10-29 10:27:53 +01:00
Guillaume Damiand 9e3f264e2c Add an include CGAL_Common.cmake 2018-10-23 13:44:00 +02:00
Simon Giraudot 0c2d09ae72 Mention change of serialization in the list of changes to the original code 2018-10-19 10:24:45 +02:00
Guillaume Damiand 92ba7fa6c9 Update minimum cmake required version in all CMakeLists.txt 2018-10-18 14:49:23 +02:00
Guillaume Damiand 0bd9088b5a Remove all include( ) and include( CGAL_CreateSingleSourceCGALProgram ) in CMakeLists.txt; they are no more required. 2018-10-17 14:17:08 +02:00
Guillaume Damiand 7f09308d33 Remove all include_directories(BEFORE ../../include) in CMakeLists.txt 2018-10-17 13:07:22 +02:00
Andreas Fabri 0b188f6dbf With VC++ you must open a binary stream 2018-10-12 10:37:43 +02:00
Simon Giraudot adc108ca75 Fix warning unused variable 2018-10-12 10:36:15 +02:00
Simon Giraudot d07dd3c17e Update config files with new format 2018-10-12 10:35:40 +02:00
Sébastien Loriot 2f9408f867 rename link name to match package name 2018-10-08 10:28:55 +02:00
Sébastien Loriot ea240cfac5 use \PkgXXX instead of \PkgXXXSummary 2018-10-08 10:28:44 +02:00
Sébastien Loriot a2e8a1c68f add the suffix Ref to doxygen link to reference 2018-10-08 10:26:56 +02:00
Simon Giraudot 55b269d12a Rename test to avoid conflict with other package 2018-10-04 15:39:49 +02:00
Simon Giraudot 55581cbdec Update test_io with latest Local_eigen_analysis API 2018-10-04 12:08:06 +02:00
Simon Giraudot 98402a7cd9 Add test for IO functions of Classification 2018-10-04 12:04:46 +02:00
Simon Giraudot 1b6e851774 Workaround serialization bug with null pointers 2018-10-04 12:03:26 +02:00
Sébastien Loriot 12651796a0 use a generic file with the argt class name being a macro 
since several free functions needs to be defined, it seems
to be the simplest and cleanest solution
 2018-08-28 10:35:46 +02:00
Simon Giraudot c15704177d Add dependency to Boost BZIP2 on Windows 2018-07-06 11:23:15 +02:00
Simon Giraudot 7467130cfd Fix conversion warning 2018-07-06 10:09:22 +02:00
Simon Giraudot c76f0d4b22 Add dependencies to Hash_map and Kernel_d 2018-07-05 14:14:34 +02:00
Simon Giraudot bd5d8d9170 Add dependency to PCA 2018-07-05 09:08:29 +02:00
Simon Giraudot 267b1f475e Fix types in local eigen analysis 2018-07-05 09:08:29 +02:00
Simon Giraudot c2dc2f7a98 Bugfix in test: do not use temporary reference for threaded parts (+ add verbosity) 2018-07-05 09:08:29 +02:00
Simon Giraudot 566e84f154 Fix conversion warnings 2018-07-05 09:08:28 +02:00
Simon Giraudot c50ccdbcde Fix not found library notice in CMakeLists 2018-07-05 09:08:28 +02:00
Simon Giraudot b28a548b8e Fix conversion warnings 2018-07-05 09:08:28 +02:00
Simon Giraudot 3bb2ef96df Generate config files with older version of boost for retrocompatibility 2018-07-05 09:08:28 +02:00
Simon Giraudot 3539966104 Improve OpenCV find_package(), only get required components 2018-07-05 09:08:28 +02:00
Simon Giraudot 241bbdb16a Update CMakeLists.txt messages to trigger testsuite missing requirement detection 2018-07-05 09:08:28 +02:00
Simon Giraudot 4ceb1b3f39 Replace CGAL_assertion() by assert() in tests 2018-07-05 09:08:28 +02:00
Simon Giraudot 9b06cc3fac Fix convertion warnings and update iterator type 2018-07-05 09:08:28 +02:00
Simon Giraudot 754f44167d Update assertion with new number of generated features 2018-07-05 09:08:27 +02:00
Simon Giraudot 2ca491f81e Add a see-also for neighbor query class to their neighborhood structure 2018-07-05 09:08:27 +02:00
Simon Giraudot 3703436955 Replace std::size_t by unsigned int 2018-07-05 09:08:27 +02:00
Simon Giraudot 29433bc164 Fix PointRange -> ClusterRange 2018-07-05 09:08:27 +02:00
Simon Giraudot d354fcba74 Add missing includes for header check 2018-07-05 09:08:27 +02:00
Simon Giraudot ecde89063b Add missing SPDX identifiers 2018-07-05 09:08:27 +02:00
Simon Giraudot f2aeb9f9d9 Replace author by authors 2018-07-05 09:08:27 +02:00
Simon Giraudot 81ca078932 Replace energies by probabilities 2018-07-05 09:08:27 +02:00
Simon Giraudot 656d0a5e78 Update doc with review 2018-07-05 09:08:27 +02:00
Simon Giraudot 7b323a5e4c Fix badly defined constructor when CGAL is not linked with TBB 2018-07-05 09:08:26 +02:00
Simon Giraudot 9a5a4770a5 Handle deprecated code (deprecated warnings + test) 2018-07-05 09:08:26 +02:00
Simon Giraudot 71f9425256 Remove outdated functions 2018-07-05 09:08:26 +02:00
Simon Giraudot 07ed11346d Some additions to the manual 2018-07-05 09:08:26 +02:00
Simon Giraudot f95531995e Add doc dependency to BGL 2018-07-05 09:07:33 +02:00
Simon Giraudot 59b90c2896 First full version of the user manual of Classification 2.0 2018-07-05 09:07:33 +02:00
Simon Giraudot 84f0bcfe04 Update Classification user manual 2018-07-05 09:07:33 +02:00
Simon Giraudot 99447947a8 Update Classification examples 2018-07-05 09:07:33 +02:00
Simon Giraudot bfb89cca73 Update API of Classification + reference manual 2018-07-05 09:07:33 +02:00
Simon Giraudot 38b0aedebe Reduce memory consumption of neighborhood using boost::uint32_t 2018-07-05 09:07:32 +02:00
Simon Giraudot 369d93aca7 Update examples 2018-07-05 09:07:32 +02:00
Simon Giraudot e4b373e7e5 Reduce memory consumption using compressed float and saving fewer things 2018-07-05 09:07:32 +02:00
Simon Giraudot 9c29c75ce8 Only call operator[] once 2018-07-05 09:07:32 +02:00
Simon Giraudot 82af495159 Make API of Evaluation more flexible 2018-07-05 09:07:32 +02:00
Simon Giraudot 9a25a1248d Update doc, examples and tests of Classification 2018-07-05 09:07:32 +02:00
Simon Giraudot d5d501da51 Better API for eigen analysis + cluster variant 2018-07-05 09:07:32 +02:00
Simon Giraudot b6502a05c2 Add cluster classes to Classification 2018-07-05 09:07:32 +02:00
Simon Giraudot 3f37fa504f WIP: better API of feature generators + eigen analysis 2018-07-05 09:07:32 +02:00
Simon Giraudot 49aea9ec26 Update mesh classification 2018-07-05 09:07:32 +02:00
Simon Giraudot 676a1989df Simplifying features + better parallelization API 2018-07-05 09:07:31 +02:00
Simon Giraudot f9ccc86238 Recover Mesh Classification from outdated dirty branch 2018-07-05 09:07:31 +02:00
Laurent Rineau b86fff3f90 Merge pull request #3128 from sgiraudot/Solver_interface-Warn_against_diagonalize_traits-GF 
Solver Interface: deprecate CGAL::Diagonalize_traits
 2018-06-27 10:21:37 +02:00
Laurent Rineau fad43cfed8 Merge pull request #3177 from sgiraudot/Classification-Bugfix_grid_has_points-GF 
Classification: Fix bug + clean up has_points() method in Planimetric_grid
 2018-06-20 17:20:58 +02:00
Simon Giraudot 95e6d089fa Include Eigen in CMakeLists.txt where needed 2018-06-19 10:57:55 +02:00
Simon Giraudot 41d554fe58 Deprecating Diagonalize_traits: document dependency to Eigen 2018-06-19 10:57:55 +02:00
Simon Giraudot 34e05470a4 Fix bug + clean up has_points() method in Planimetric_grid 2018-06-18 10:49:59 +02:00
Sebastien Loriot 1b84d7402d
Merge pull request #2978 from MaelRL/PMap-Fix_Default_pmap-GF 
Property map: fix get() not returning the default value
 2018-05-15 22:09:59 +02:00
Laurent Rineau 03e68d8740 Merge pull request #2985 from afabri/CGAL-std_latest-GF 
Support C++17 (Replace std::random_shuffle() with CGAL::random_shuffle(), and other adjustments)
 2018-04-24 17:32:55 +02:00
Andreas Fabri c54a6a4980 Put CGAL::random_shuffle() in the subnamespace cpp98 2018-04-11 09:32:23 +01:00
Simon Giraudot 02864d60bc Classification:fix introduced release 2018-04-09 11:18:47 +02:00
Andreas Fabri 063a91a771 Use CGAL::random_shuffle 2018-04-04 14:00:23 +01:00
Mael Rouxel-Labbé 288417a9ed Renamed Default_property_map to Constant_property_map 2018-04-03 14:11:49 +02:00
Simon Giraudot dfc1564865 Some clean up 2018-03-21 09:34:05 +01:00
Simon Giraudot 155e9c8720 Undocument internal and experimental features 2018-03-19 11:37:27 +01:00
Simon Giraudot 259a625142 Compute gradient of feature 2018-03-19 11:37:25 +01:00
Simon Giraudot f634f3176c Compute local eigen analysis on clusters 2018-03-19 11:37:25 +01:00
Laurent Rineau 0a74393dcf Commit all new dependencies files 2018-03-06 18:44:48 +01:00
Laurent Rineau 6553d7a9b3 Fix check_headers in master 2018-02-20 10:59:04 +01:00
Laurent Rineau 78e7060525 Merge pull request #2712 from afabri/CGAL-VC+warnlevel_4-GF 
Deal with VC++ warnings of level /W4
 2018-02-19 14:27:06 +01:00
Sébastien Loriot 483f69728e Refresh branch 2018-02-12 22:21:38 +01:00
Maxime Gimeno f183a26b7c add missing include in Classification 2018-02-05 10:34:49 +01:00
Maxime Gimeno 4d440a6b85 add missing include <map> 2018-02-05 07:50:15 +01:00
Maxime Gimeno a6b455b618 Fixes 2018-02-02 13:52:33 +01:00
Maxime Gimeno 688b5dd06e Move dependencies creation to package_info and add dependencies to git 2018-02-02 12:08:05 +01:00
Maxime Gimeno 8bde832931 Fix METIS headers in BGL 2018-02-02 12:08:05 +01:00
Maxime Gimeno a676d5a60e Try to fix errors in classification checks 2018-02-02 12:08:05 +01:00
Maxime Gimeno acd0a72edf Modify travis script to test dependencies 2018-02-02 12:08:05 +01:00
Maxime Gimeno ae36b452bc Add dependencies of all packages 2018-02-02 12:08:05 +01:00
Maxime Gimeno 7fa4b380d2 fixes in includes logic. 2018-02-02 12:08:05 +01:00
Simon Giraudot 30713b02c6 Disable *once again* that boost counting iterator warning 2018-01-31 13:56:05 +01:00
Andreas Fabri dc2f37a4ae disable/enable warnings 2018-01-24 08:59:20 +00:00
Simon Giraudot 6269309d86 Use CGAL include for boost counting/transform iterators everywhere 2018-01-23 11:09:52 +01:00
Andreas Fabri 8d15f77479 Workaround for silencing a cmake warning for older versions 2018-01-17 08:54:06 +00:00
Andreas Fabri effca64dd4 Cast to avoid warning 2018-01-17 07:31:34 +00:00
Andreas Fabri 0922ccaefb fix more Windows warnings 2018-01-16 08:54:44 +00:00
Simon Giraudot 3db48cd98e Fix windows warning 2018-01-16 08:54:12 +01:00
Simon Giraudot 3d17f81308 Fix bug in CMakeLists: WIN23 -> WIN32 2018-01-15 11:00:20 +01:00
Simon Giraudot 323281358b Disable Windows warnings from auxiliary library 2018-01-12 14:15:05 +01:00