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Author SHA1 Message Date
Andreas Fabri 2c4c38809d switch internally to BGL API in mesh segmentation. We still have to deal with the point property maps 2014-06-05 12:05:54 +02:00
Andreas Fabri 4a37f74122 switch to new BGL API 2014-06-04 21:28:59 +02:00
Sébastien Loriot 6ee3c59489 doc bug-fix: Hidden_type -> unspecified_type 
theses were coming from merges done after the global replacement
 2014-06-02 07:47:05 +02:00
Sébastien Loriot 4a115d7655 trivial bug-fix for master: fix namespace 2014-04-22 16:35:18 +02:00
Laurent Rineau fd70ee758c Fix license of Surface_mesh_segmentation headers 
The package is copyright GeometryFactory, and published under license
GPLv3+.

The file <CGAL/internal/auxiliary/graph.h> is a special case: it is
owned by an external (Yuri Boykov) and was released under GPLv2+. That
means than we can relicense it to GPLv3+.
 2014-02-06 18:36:21 +01:00
Sébastien Loriot bb45eeaac4 set release number introducing the segmentation package 2014-01-09 23:52:48 +01:00
Sébastien Loriot 4c0a266c9f remove TODO file 2014-01-09 23:47:50 +01:00
Sébastien Loriot d481ded8ba use timers in graph cut only if CGAL_SEGMENTATION_BENCH_GRAPHCUT is defined 2014-01-08 10:25:48 +01:00
Sébastien Loriot 077fa0c933 remove trailing whitespaces 2014-01-08 10:10:21 +01:00
Sébastien Loriot 97e7162948 add documentation pictures 2014-01-06 17:53:14 +01:00
Sébastien Loriot 4257839c64 shorten example name to please windows test suite 2013-12-23 16:49:48 +01:00
Sébastien Loriot 3a0853a27b fix warnings 2013-12-23 16:49:47 +01:00
Sébastien Loriot c4a1ac227a int -> size_t in benchmark and demo 2013-12-23 16:49:47 +01:00
Sébastien Loriot ad44ab3a92 remove compilation warnings 2013-12-23 16:49:46 +01:00
Sébastien Loriot 98b361acd1 split the requirements for the computation of the dihedral angle 2013-12-23 16:49:46 +01:00
Sébastien Loriot 61c91a1971 turn int to std::size_t when it is possible 2013-12-23 16:49:46 +01:00
Sébastien Loriot 6e8dccea0f simplify first example 2013-12-23 16:49:45 +01:00
Sébastien Loriot 5a6523ac86 fix a warning in MAXFLOW 
warning: dereferencing type-punned pointer will break strict-aliasing rules
 2013-12-23 16:49:45 +01:00
Sébastien Loriot 6fc429f1de fix warnings in MAXFLOW 2013-12-23 16:49:44 +01:00
Sébastien Loriot e54a0e758e turn number_of_center from int to std::size_t 2013-12-23 16:49:44 +01:00
Sébastien Loriot 7cf48beb41 int -> size_t to remove warnings 2013-12-23 16:49:44 +01:00
Sébastien Loriot dd485f4839 add empty line at the end of the files to remove a warning 2013-12-23 16:49:44 +01:00
Sébastien Loriot c458b0525f handle an API change of boost::compressed_sparse_row_graph in boost 1.40 2013-12-23 16:49:43 +01:00
Sébastien Loriot 38c0d2067a on win64 sizeof(long long)=sizeof(void*) 2013-12-23 16:49:43 +01:00
Sébastien Loriot 6a5d44c2b1 use property map include from CGAL 2013-12-23 16:49:42 +01:00
Sébastien Loriot 8affb01604 fix call to delete for an array 2013-12-23 16:49:42 +01:00
Sébastien Loriot fc4f4c9870 add an example with the graph cut using boost 2013-12-23 16:49:42 +01:00
Sébastien Loriot e2c7bd1884 remove extra typename and add EOL 2013-12-23 16:49:42 +01:00
Sébastien Loriot 8848fd691e using CGAL_CFG_NO_CPP0X_DEFAULT_TEMPLATE_ARGUMENTS_FOR_FUNCTION_TEMPLATES 2013-12-23 16:49:41 +01:00
Sébastien Loriot 1caf8174c0 improve user manual 2013-12-23 16:49:41 +01:00
Sébastien Loriot 7ce41550b3 rename all the function consistently 2013-12-23 16:49:41 +01:00
Sébastien Loriot 2f1bf6fcd3 rename parameter extract_segments to output_cluster_ids and flip the behavior 2013-12-23 16:49:41 +01:00
Sébastien Loriot ad5582fea9 rephrasing in user manual 2013-12-23 16:49:40 +01:00
Sébastien Loriot 9202c79586 update user manual after 3rd review round 2013-12-23 16:49:40 +01:00
Sébastien Loriot f160e9cbe0 user manual changes after 3rd review round 2013-12-23 16:49:40 +01:00
Sébastien Loriot 5a2386f7ca user manual changes after 3rd review round 2013-12-23 16:49:39 +01:00
Sébastien Loriot 91123492ba add classified refman 2013-12-23 16:49:39 +01:00
Sébastien Loriot 6a261647e3 hide the benchmark section 2013-12-23 16:49:39 +01:00
Sébastien Loriot 2b5df0eada small update of the user manual 2013-12-23 16:49:39 +01:00
iyaz 5ee42bd4dd update main image and caption in user doc 2013-12-23 16:49:38 +01:00
Sébastien Loriot 84649e0973 fix benchmark for gcc 2013-12-23 16:49:38 +01:00
Sébastien Loriot b0d94f055b polish user manual after reviewer's comment 2013-12-23 16:49:37 +01:00
Sébastien Loriot 7acb1ef98a put MaxFlow graph in a namespace to avoid pollution 2013-12-23 16:49:37 +01:00
iyaz 628b89eed8 update benchmark with known models and their timings 2013-12-23 16:49:37 +01:00
iyaz 7e725e2995 Code for measuring performance presented in user manual and associated data 2013-12-23 16:49:36 +01:00
Sébastien Loriot f1f0f96ab5 add a benchmark result for graph cut 2013-12-23 16:49:36 +01:00
Sébastien Loriot 1f6c7cc663 rename section 2013-12-23 16:49:36 +01:00
Sébastien Loriot cbc220e75e add kernel requirement 2013-12-23 16:49:35 +01:00
Sébastien Loriot 15197c4b19 add a requirement on FT 2013-12-23 16:49:35 +01:00
Sébastien Loriot b74389b7aa make the code working with a kernel with Gmpq as FT 2013-12-23 16:49:33 +01:00
Sébastien Loriot 9765348421 remove Construct_unit_normal_3 from requirements of the traits 2013-12-23 16:48:45 +01:00
Sébastien Loriot 1bd80c4c41 avoid calling the function twice 2013-09-06 14:50:55 +02:00
iyaz 9d608a8688 temproray work-around compilation prob where sizeof(int) == sizeof(long) -> the same specialization will be defined twice 2013-09-06 01:11:38 +03:00
iyaz bf86ca842c add number_of_cluster > 0 as a precondition, fix typos in internal comments 2013-09-06 00:48:58 +03:00
Sébastien Loriot 009c8727e0 use maxflow as default implementation 2013-09-05 11:23:10 +02:00
Sébastien Loriot aad5c09bcf hack to make MaxFlow working with 64bits compilers 2013-09-05 11:22:16 +02:00
Sébastien Loriot 3bf4a26273 remove warnings reported by gcc 2013-09-05 10:34:03 +02:00
Sébastien Loriot b5c08b31ed print values on one line in the examples 2013-09-05 10:31:07 +02:00
Sébastien Loriot 6665a1247d typo 2013-09-05 09:28:49 +02:00
Sébastien Loriot d91930456f run spell checker on the user manual 2013-09-05 09:26:50 +02:00
Sébastien Loriot f3bef2ed1c a few fixes in the refman following reviewers comments 2013-09-05 09:11:32 +02:00
Sébastien Loriot 893dd479d6 a few fix in the user manual following the reviewers comments 2013-09-05 09:09:08 +02:00
Sébastien Loriot 23dd0d3df8 user manual: use MaxFlow as default 2013-09-04 19:49:18 +02:00
Sébastien Loriot ecc6cd0a0b fix function doc 2013-09-04 19:47:47 +02:00
Sébastien Loriot 0052bf9643 do not document Fast_sdf_calculation_mode 2013-09-04 17:44:12 +02:00
Sébastien Loriot 1e2c6955a5 rephrasing 2013-09-04 17:11:52 +02:00
Sébastien Loriot 352518f1d5 hide implementation details 2013-09-04 17:08:25 +02:00
Sébastien Loriot 655fb0ffd9 use markdown support for writing tables 2013-09-04 16:33:34 +02:00
Sébastien Loriot 9a4ba5df06 fix todos in user manual 2013-09-04 15:18:18 +02:00
Sébastien Loriot 0f055bdca1 fix doc typos 2013-09-04 13:40:20 +02:00
Sébastien Loriot 8bfb934dd6 enhance examples 2013-09-04 13:40:04 +02:00
Sébastien Loriot fa5fa456f9 enhance user manual: history 2013-09-04 12:08:25 +02:00
Sébastien Loriot a089cb0f4c remove unused args from examples 2013-09-04 12:02:16 +02:00
Sébastien Loriot 4ab3c37b64 missing parameter after update from master 2013-09-04 12:01:48 +02:00
Sébastien Loriot 4005e2bc79 add missing bool in function call 2013-09-04 11:58:52 +02:00
Sébastien Loriot a69f9189b3 enhance user manual: User interface 2013-09-04 11:49:55 +02:00
Sébastien Loriot 5258298687 enhance user manual: clustering 2013-09-04 11:36:55 +02:00
Sébastien Loriot 37c6ccd0cc enhance user manual: sdf value computation description 2013-09-04 11:22:48 +02:00
Sébastien Loriot eeeed29a82 enhance user manual: introduction 2013-09-04 09:26:47 +02:00
Sébastien Loriot ba68d06ad6 fix usage of which are where in the doc 2013-09-04 08:42:31 +02:00
Sébastien Loriot a97f340f68 using cgalCite macro 2013-09-04 08:24:46 +02:00
iyaz 914ee9e6b4 fix warnings (std::size_t to int conversions), 
MAD : 1 -> 1.5,
 2013-08-28 17:18:05 +03:00
iyaz 1cae7388d0 simplify sentence in graph cut 2013-08-09 00:03:00 +03:00
iyaz c20b02be58 remove notes about related to segment since: 
- they are repetitive
- with the addition of the new figure, distinction should be clear (or we should make it more clear in just one place)
 2013-08-08 21:20:15 +03:00
iyaz e234886f36 introduce postprocess_sdf_values in sdf values example 2013-08-08 21:12:07 +03:00
iyaz ed7218ae84 do not use epsilon for min since it does not effect the results, 
and this also fix the optimization bug in MSVC-64
 2013-08-08 21:06:22 +03:00
iyaz 322cf090b8 rephrase sentence in graph-cut about segment-cluster. 2013-08-08 18:56:32 +03:00
iyaz a0bf04f654 remove one-ring (just leave edge-adjacent) both in ref and user manual 2013-08-08 17:14:57 +03:00
iyaz 60936e12e5 cluster-id segment-id related changes in API part of the doc 2013-08-08 03:48:11 +03:00
iyaz d58febb8c6 rephrase "That way" 2013-08-08 02:42:39 +03:00
iyaz 6bedf47360 add postprocess function to the API (doc related) 2013-08-08 02:34:21 +03:00
iyaz dd5bf0ec3e add postprocess function to the API (code related changes) 2013-08-08 02:33:20 +03:00
iyaz 36d50d9477 add another parameter to API which lets user to get either cluster or segment ids as output 2013-08-06 23:23:56 +03:00
iyaz 2f8052312c add figure segment vs cluster 2013-08-06 23:21:03 +03:00
iyaz a2b4984361 caption change on Segmentation_pose_changes figure 2013-08-06 16:59:49 +03:00
iyaz 257ae2c781 Create another section called Implementation Details, and move ray sampling details under it 2013-08-06 13:01:43 +03:00
iyaz d4b347fccc clear exp on postprocessing step 2013-08-06 12:32:22 +03:00
iyaz 317ee4a7ea Function Documentation related changes (based on comments of reviewer-1) 2013-08-06 12:31:28 +03:00
iyaz 723e4593dc API(explanations) related changes (based on comments of reviewer-1) 2013-08-06 11:52:04 +03:00
iyaz 2996be191f improve formatting 2013-08-06 01:18:19 +03:00
iyaz 41d59aae2b 2.2. and 2.3 related changes (based on comments of reviewer-1) 2013-08-06 01:17:12 +03:00
iyaz 0bc3c61e13 simplify by reading one predefined off file 2013-08-06 01:01:52 +03:00
iyaz 5544dc6a8d 2.1. related changes (based on comments of reviewer-1) 2013-08-05 18:55:34 +03:00
iyaz ddd156bf7b Introduction related changes (based on comments of reviewer-1) 2013-08-05 17:54:25 +03:00
Sébastien Loriot d2e4678e43 update figure caption 2013-08-05 07:39:14 +02:00
Sébastien Loriot 0a651d4a88 add a link to the equation to explain a parameter 2013-07-26 17:29:08 +02:00
Sébastien Loriot 5ce5a5fad4 remove latex dedicated image command (they are now handled in the cgal macro) 2013-07-26 17:05:43 +02:00
Sébastien Loriot fc64c61cf2 accomodate changes to build doc with cmake 2013-07-26 13:36:43 +02:00
Sébastien Loriot 1615b15579 accomodate the changes of the AABB tree package 2013-07-26 13:27:04 +02:00
Sébastien Loriot 33aecff166 add missing template keyword 2013-07-25 18:39:18 +02:00
iyaz c919081e16 Revert "Use BOYKOV_KOLMOGOROV for test - will be reversed" 
This reverts commit 0364b9f4f0d134563749216460aa9abf6b8389ee.
 2013-07-22 11:44:17 +03:00
iyaz 7545de5539 Use BOYKOV_KOLMOGOROV for test - will be reversed 2013-07-22 11:15:25 +03:00
iyaz 4d5f8a0e54 Fixing ambiguous call - gcc 2013-05-20 16:02:35 +03:00
iyaz bab9218257 Fixing warning - gcc 2013-05-20 15:25:56 +03:00
Sébastien Loriot bfb2b44f3a forward types to satisfy gcc 2013-05-20 13:47:20 +02:00
Sébastien Loriot ef9ea573d4 add missing typename 2013-05-20 13:10:55 +02:00
Sébastien Loriot 9e6fb6f355 fix typos in doc 2013-05-15 09:56:03 +02:00
Sébastien Loriot 6de820ac0a add release number in benchmark section 2013-05-15 09:55:12 +02:00
Sébastien Loriot b0ca4b5d05 fix link issue 2013-05-15 09:52:16 +02:00
iyaz 5410a21049 ms -> milliseconds 2013-05-14 19:01:25 +03:00
iyaz e5c26f6fe3 Documentation improvements (from Andreas's comments) 2013-05-14 18:44:08 +03:00
iyaz 2f844f5dbc remove CGAL:: from functions and add () at the end 2013-05-14 15:39:09 +03:00
Sébastien Loriot 41e1b9c120 center tables in doc and fix typos 2013-05-14 09:05:42 +02:00
iyaz c2dbdcec8f Adding performance section 2013-05-14 02:00:48 +03:00
iyaz 7b7417780a new implemenation using boost CSR graph, it can be 1.5x faster from prev implementation but there is a performance problem that I couldn't solve using public functionality of graph (however there might be a solution) 
will look it back.
 2013-05-13 23:00:37 +03:00
iyaz 9c026f14ba remove unrelated code (remaining from debug related purposes) 2013-05-12 17:49:57 +03:00
iyaz ea4ebfa17e forgotten name changed in documentation 
(from nontype template parameter name is changed from fast_bbox_intersection to Fast_sdf_calculation_mode)
 2013-05-11 21:15:33 +03:00
iyaz e24653a617 Add new test for fast_sdf_calculation_mode, 
change disk sampler test, mesh segmentation test (due to interface changes)
untabify
 2013-05-10 17:14:17 +03:00
iyaz 789ee361cb nontype template parameter name is changed from fast_bbox_intersection to Fast_sdf_calculation_mode 2013-05-10 15:42:01 +03:00
iyaz 50c6542740 doc - lowercase -> uppercase after dot 2013-05-10 15:27:35 +03:00
iyaz a3fba15c95 untabify examples 2013-05-10 15:26:43 +03:00
iyaz 67047affcd making fast_bbox_intersection optional 2013-05-09 18:45:28 +03:00
iyaz d46a29af46 dummy element forgotten from prev version, removed. 2013-04-24 22:31:47 +03:00
iyaz f269e1fd21 use CGAL Random instead of rand(), 
update plus plus initialization so that there is no need to extra temp for swap etc
 2013-04-24 17:36:09 +03:00
iyaz b22fe586d2 Updated test cases 2013-04-19 02:04:37 +03:00
iyaz 1c390474ff Various refinements on k-means and EM, 
Selectors are moved to its own class and shared by k-means and EM (hence previous partially code duplication is prevented)
 2013-04-19 02:04:09 +03:00
iyaz e9cc8bcd5e Slightly improved performance, and small refinements 2013-04-17 01:55:21 +03:00
iyaz c3b842dc46 Using diagonal of AABB box to convert rays to segments 2013-04-16 20:58:40 +03:00
iyaz 65fc0a0b6b Changes to guarantee there will be no border case problems with cone angle in [0, PI]. 2013-04-16 18:19:56 +03:00
iyaz 68197c0352 SDF calculation is enriched to be more generic by accepting sdf calculation over points with normals 2013-04-15 13:58:50 +03:00
iyaz 6877a532ab Adding <= 0 check for cone angle 2013-04-12 15:55:20 +03:00
Sébastien Loriot ddc7fe2d77 add missing typenames and remove warning 2013-04-12 09:31:45 +02:00
Sébastien Loriot 9ffbbe3a05 smooth doc 2013-04-09 08:33:06 +02:00
iyaz a3a3660782 Examples are named and section/subsection'ing is better now. 2013-04-08 02:07:59 +03:00
iyaz 664a736675 Small improvements on ref-man. 2013-04-08 02:05:40 +03:00
iyaz 5c093049f5 Remove [0, 1] clipping of smoothing_lambda, and just suggest that in ref-man comments. 2013-04-08 01:16:55 +03:00
iyaz 0c243507a2 Clearing unnecessary typedefs, 
Fixing warnings raised by FT float kernels.
 2013-04-05 15:56:29 +03:00
Sébastien Loriot cd6fd3dae1 update figure caption 2013-04-03 06:58:57 +02:00
iyaz ab409c8bac Clarify window size, 
clarify same colors for different segments.
 2013-04-02 20:59:33 +03:00
iyaz 060bb3e3ff update comments, 
add missing explicit namespace qualifier for tie (boost)
 2013-04-02 20:02:38 +03:00
Sébastien Loriot 6cde7ffc65 remove todos 2013-04-02 15:11:57 +02:00
Sébastien Loriot be02ee3a39 better comment in an example 2013-04-02 15:11:41 +02:00
Sébastien Loriot eac22e273d add comments on number of rays 2013-04-02 15:11:09 +02:00
iyaz 302bab632e Some todo's are answered. Some remain to be discussed. 2013-04-01 17:57:39 +03:00
iyaz 36a26b328d Make 'spatial & range parameters' parameters to bilateral filtering 2013-04-01 17:56:28 +03:00
iyaz 0c77beb2b1 Handle <= 0 levels while BFT 2013-04-01 15:37:08 +03:00
Sébastien Loriot e26b97d9d7 update property map linking 2013-03-14 17:05:19 +01:00
Sébastien Loriot eeb7807da5 add a filter adaptor to have several smoothing steps 2013-02-15 12:46:44 +01:00
Sébastien Loriot 6ec442e864 add more documentation for the disk sampling 2013-02-14 17:04:59 +01:00
Sébastien Loriot 015b9ca4f9 make range_parameter explicit 2013-02-14 17:04:35 +01:00
Sébastien Loriot c6da40a8fa add a question 2013-02-14 17:04:18 +01:00
Sébastien Loriot 949e102661 add the possibility to set the window size 2013-02-13 19:08:38 +01:00
Sébastien Loriot bb165e8e15 add a remark 2013-02-13 19:00:23 +01:00
Sébastien Loriot e473938124 add a dummy filter to switch sdf value filtering off 2013-02-13 18:57:01 +01:00
Sébastien Loriot 2105474563 doc: add backticks and () to function calls 2013-02-13 18:54:49 +01:00
Sébastien Loriot 0adf55363f document implementation detail 2013-02-13 08:04:00 +01:00
Sébastien Loriot 32cad3821b improve phrasing 2013-02-13 07:37:16 +01:00
Sébastien Loriot 0b6cebeac1 add a set of definitions in the introduction 2013-02-12 18:54:08 +01:00
Sébastien Loriot 4a0e6b7707 use the note doxygen command to emphase 2013-02-12 18:35:21 +01:00
Sébastien Loriot d86193ab09 NT is not used in the code. Remove it from the concept 2013-02-12 17:16:49 +01:00
Sébastien Loriot 2f43a47554 prevent linking 2013-02-11 19:22:53 +01:00
Sébastien Loriot 7fd9c015a0 using macros for figures 2013-02-11 19:20:36 +01:00
Sébastien Loriot c756793c93 add todos 2013-02-11 19:04:41 +01:00
Sébastien Loriot 60436ac16c polish the segmentation user manual 2013-02-11 18:43:10 +01:00
Sébastien Loriot a82c1456c5 adding me as author 2013-02-11 18:11:40 +01:00
Sébastien Loriot a67b7d7f8b add example file for segmentation doc 2013-02-11 18:11:01 +01:00
Sébastien Loriot a2f7b1e07c adding backticks 2013-02-08 14:57:19 +01:00
Sébastien Loriot 82cb79fb50 rephrasing 2013-02-08 14:37:48 +01:00
Sébastien Loriot 63de1129d1 update code for plugin compilation 2013-01-16 18:54:59 +01:00
Sébastien Loriot b9a42236d5 port the documention to the latest CGAL doxygen setup 2013-01-16 18:05:13 +01:00
Sébastien Loriot bdf9e75c04 recoding crlf end of line 2013-01-14 19:49:00 +01:00
Sébastien Loriot 82eec48453 Merge branch 'gsoc2012-segmentation-iyaz-old' into gsoc2012-segmentation-iyaz 
Conflicts:
	.gitattributes
	Polyhedron/demo/Polyhedron/CMakeLists.txt
 2013-01-14 19:48:08 +01:00
iyaz 80521d65a4 A comment on cone-angle was forgotten, fixed. 2013-01-14 18:57:01 +02:00
iyaz 2b51adca20 Small changes on documentation 2013-01-14 18:55:31 +02:00
iyaz cb5e7b0edb Shorten the example, now default call is placed inside a comment. 2013-01-13 00:34:19 +02:00
iyaz e440cb2c1d AABB_traversal_traits.h & Alpha_expansion_graph_cut.h & SDF_calculation.h: Removal of unused code sections. 
SDF_calculation.h: MAD for removing outlier approach
 2013-01-12 21:55:34 +02:00
iyaz c6cc177bfa API function names are changed: 
old name                                  -> new name
sdf_values_computation                    -> compute_sdf_values
surface_mesh_segmentation_from_sdf_values -> segment_from_sdf_values
surface_mesh_segmentation                 -> compute_sdf_values_and_segment

Also example code files are changed accordingly.
 2013-01-12 15:59:58 +02:00
iyaz 03910a86ce Update on documentation, considering reviews. 2013-01-11 00:53:44 +02:00
Ílker Yaz 03e0952c96 -code review in outlier-removal 
-use make_pair & make_tuple
-handles are passed by value
 2012-09-05 17:25:44 +00:00
Sébastien Loriot 5cd9c2ce74 do not document internal namespace 2012-09-03 08:52:34 +00:00
Ílker Yaz 5ff1aed804 changing dft to bft (for segment extracting) 
and review.
 2012-09-01 02:26:02 +00:00
Ílker Yaz ab6b5ebb57 Code & comment review. 2012-08-30 18:18:40 +00:00
Ílker Yaz 7064d52d63 Integrating MAXFLOW software. 2012-08-30 14:58:37 +00:00
Ílker Yaz 42e8424912 Taking traits object as parameter. 2012-08-30 11:41:00 +00:00
Sébastien Loriot f45a163cf2 add another functor requirement 2012-08-29 05:52:13 +00:00
Ílker Yaz 3b121490a4 small change (convert substraction of points to vector construction) 2012-08-29 02:37:51 +00:00
Ílker Yaz 92a49835d8 Integrating Construct_centroid_3 2012-08-29 02:26:09 +00:00
Ílker Yaz 83d2f4d8b6 Integrating Construct_translated_point_3 2012-08-29 02:23:43 +00:00
Ílker Yaz fe60f52cd3 Integrating Construct_normal_3 & Construct_unit_normal_3 2012-08-29 02:16:54 +00:00
Ílker Yaz d114ec42d8 Intergating Construct_sum_of_vectors_3 2012-08-29 02:11:52 +00:00
Ílker Yaz 223ed06159 Integrating Construct_scaled_vector_3 2012-08-29 02:05:04 +00:00
Ílker Yaz 4feaec7dba Change Polyhedron::Traits with SegmentationGeomTraits 
- integrate Angle_3
 2012-08-29 01:58:54 +00:00
Ílker Yaz 27b6cb1507 Integrating SegmentationGeomTraits into Surface_mesh_segmentation 2012-08-29 01:14:43 +00:00
Ílker Yaz 298f168346 Integrating SegmentationGeomTraits 
- New template parameter is added to SDF_calculation and Surface_mesh_segmentation
- mesh_segmentation.h is changed according to passing trait parameter to Surface_mesh_segmentation
 2012-08-29 00:57:38 +00:00
Ílker Yaz 445e63c40c Added test files, and code review. 2012-08-29 00:16:44 +00:00
Sébastien Loriot 38a712b5cf introduce the geometric traits in the code and 
in the documentation, but did not really change something in the code.
 2012-08-28 15:28:37 +00:00
Sébastien Loriot 7fb3bfaaa2 avoid conflict with CGAL::internal::sqrt 2012-08-28 13:21:47 +00:00
Sébastien Loriot 98ec2762eb use CGAL's sqrt function 2012-08-28 13:18:54 +00:00
Sébastien Loriot aa3a0b0cdf fix initialization order 2012-08-28 13:16:26 +00:00
Sébastien Loriot 8e3b75cf22 typo 2012-08-28 06:10:24 +00:00
Ílker Yaz d92e7ecebd Small correction for comments. 2012-08-28 02:49:42 +00:00
Ílker Yaz ab9cb4b250 Code review. 2012-08-28 02:44:30 +00:00
Sébastien Loriot 6956642f14 remove TODO 2012-08-27 08:59:13 +00:00
Sébastien Loriot 6769e99426 aspell check 2012-08-27 08:58:48 +00:00
Sébastien Loriot 1a62f79ae1 rephrase doc 2012-08-27 08:57:28 +00:00
Ílker Yaz 6b8835b9b1 User manual is updated. 
Code review (unused includes are removed)
(Added an experimental filtering)
 2012-08-27 02:40:34 +00:00
Ílker Yaz c001aa1662 Now, returned segment-ids are ordered by average sdf value of the segment (facets that construct that segment). 2012-08-24 19:33:41 +00:00
Sébastien Loriot 11042094a9 update TODOs 2012-08-24 06:00:41 +00:00
Ílker Yaz 58fccbef0a Fix a copy-paste error. 2012-08-24 02:53:25 +00:00
Ílker Yaz b093a9a7c7 Small changes on Surface_mesh_segmentation 2012-08-24 02:29:00 +00:00
Ílker Yaz e09404c202 Update on demo for coloring SDF and segmentation. 2012-08-24 01:49:47 +00:00
Ílker Yaz d6f1d70ebe Fix (copy/paste error) 2012-08-23 13:37:51 +00:00
Ílker Yaz 83d5a268c8 remove unused functions 2012-08-23 12:27:21 +00:00
Sébastien Loriot de3c160b41 rephrase 2012-08-23 07:25:55 +00:00
Sébastien Loriot 28d6da3bbb add cmd file 2012-08-23 07:04:41 +00:00
Sébastien Loriot 8d16075118 update doc and example 2012-08-23 07:03:58 +00:00
Sébastien Loriot 17aff431e2 missing typename 2012-08-23 06:23:34 +00:00
Ílker Yaz 0c484a175e Changes on documentation & Small change on demo. 2012-08-23 00:50:22 +00:00
Ílker Yaz f08b0bd1fb Update examples (tabs vs spaces) 2012-08-22 15:54:56 +00:00
Ílker Yaz fcfc79dfc7 1) Surface_mesh_segmentation does not hold any state now. 
2) Demo is updated (it uses the API now) (also cleaned)
   Also SDF values that are used for visualization (result of "Calculate SDF") is now linearly normalized values (previously they were log-normalized)
3) New example is added (using id's to access pmap data)
 2012-08-22 15:37:31 +00:00
Sébastien Loriot 3e5d71bcaa update reference manual 2012-08-21 07:38:50 +00:00
Sébastien Loriot edec4fd899 accomodate change in template parameters 2012-08-21 07:18:25 +00:00
Sébastien Loriot 407e8c12da invalid end of comment 2012-08-21 06:56:48 +00:00
Ílker Yaz 7d4447bd1c Alpha_expansion_graph_cut.h: 
Mostly reviewing. Also including a note about performance.
It now contains an implementation which uses MAXFLOW software (see comments in performance)

Documentation update (reference manual part)
 2012-08-21 02:48:34 +00:00
Sébastien Loriot b60ff4ac0b first pass on user manual 2012-08-20 16:27:16 +00:00
Sébastien Loriot 0bf4e22bad move bibtex entry 
add author and implementation history
 2012-08-20 14:25:09 +00:00
Sébastien Loriot c17a8fc947 fix typos 2012-08-20 13:58:09 +00:00
Sébastien Loriot 0b04a459c5 add reference to the original paper 2012-08-20 13:54:32 +00:00
Ílker Yaz ccfa68b331 small fix 2012-08-20 12:15:01 +00:00
Ílker Yaz 6887a24ec0 Warnings are fixed (hopefully). 2012-08-20 11:50:53 +00:00
Sébastien Loriot 252a20862c do not document internal class 2012-08-20 08:45:21 +00:00
Sébastien Loriot f2abaabc8f reorder init of members 2012-08-20 08:27:55 +00:00
Sébastien Loriot 9b407ec3c1 reorder initialization of members 2012-08-20 07:29:52 +00:00
Sébastien Loriot 3c7d0d6c15 add copyright holder 2012-08-20 07:23:42 +00:00
Sébastien Loriot 171173ea69 minor example improvement 
add cmd files for testsuite
remove commited cmake script
 2012-08-20 07:21:01 +00:00
Sébastien Loriot 6d8a745407 fix compilation issue on linux 2012-08-20 06:56:54 +00:00
Ílker Yaz 158b345bc2 Update in Doxyfile (Extract_private = YES) 2012-08-20 02:41:49 +00:00
Ílker Yaz ec4e20c39c Documentation updates. 
Filters are moved to another file (Filters.h)
Surface_mesh_segmentation.h moved to internal folder (and namespace).
 2012-08-20 02:29:43 +00:00
Ílker Yaz cd74403410 Documentation update 2012-08-17 17:16:06 +00:00
Ílker Yaz a743b4d572 Small corrections on examples 2012-08-16 22:59:22 +00:00
Ílker Yaz 166034aac6 Documentation update. 2012-08-16 22:38:02 +00:00
Ílker Yaz 746fdb74a3 Documentation update. 2012-08-16 01:52:30 +00:00
Ílker Yaz 0898e0a24e Mostly documentation update, 
Also small adaptor for pmap (in Surface_Mesh_Segmentation.h).
 2012-08-15 17:40:44 +00:00
Ílker Yaz cd573ea300 change directory name from example to examples. 2012-08-15 11:54:48 +00:00
Ílker Yaz 4515017d84 small change on documentation. 2012-08-15 03:16:24 +00:00
Ílker Yaz 9be818f1d1 Documentation update. 2012-08-15 03:12:50 +00:00
Ílker Yaz bd16899b40 doc folder generated. 2012-08-14 01:15:23 +00:00
Sébastien Loriot cc454b6386 remove double init 2012-08-13 13:49:10 +00:00
Ílker Yaz 66d1bf2351 Supporting meshes which have holes. 
Commenting Surface_mesh_segmentation.h functions.
 2012-08-10 17:15:47 +00:00
Ílker Yaz ed2c1a2072 Code review ( Additions to Disk_sampling.h) 2012-08-10 00:44:58 +00:00
Ílker Yaz c069153f81 Reducing effect of smoothing. 
(Actually needs to be adaptive (according to triangle count etc.))
 2012-08-07 14:02:18 +00:00
Ílker Yaz 10f4ec26ad Changing dihedral-calculation function (using Mesh_3::dihedral_angle) 
Added logging code.
 2012-08-07 00:45:57 +00:00
Ílker Yaz 8e05879f2a Code review, 
Doxygen style commenting SDF_calculation.h
Seperating 'ray sampling from cone' from SDF calculation. 
(Advanced user might want to place their own sampling algorithm for SDF calculation)
 2012-08-06 20:30:37 +00:00
Ílker Yaz 722369eda0 Reverting graph-cut to its first version. 
Adding logging to Graph-cut.
 2012-08-06 17:46:36 +00:00
Ílker Yaz 49a03e1876 Added print-outs for debugging. 2012-08-06 13:47:17 +00:00
Ílker Yaz bbec5ac94e Small changes in demo. 
(Setting rendering mode for item)
 2012-08-03 10:13:54 +00:00
Ílker Yaz 050562a5c8 demo update- 2012-08-03 09:24:39 +00:00
Ílker Yaz 58b1a2ed41 Demo - small changes. 2012-08-01 12:14:31 +00:00
Sébastien Loriot a47e562f2e fix compilation on linux 2012-07-31 06:10:18 +00:00
Ílker Yaz 4142ebbddc typo correction. 2012-07-31 01:47:31 +00:00
Ílker Yaz 792ab1f525 Using FacetIndexMap for in Surface_mesh_segmentation. 
(other structures which have a facet as key-value are converted to vectors)
Using const Polyhedron& as a parameter (previously I was using Polyhedron pointer).

mesh_segmentation.h added for API which includes free functions.

AABB_const_polyhedron_triangle_primitive.h is added for supporting Facet_const_iterator as a parameter to AABB Tree. (I am not sure that is the best solution.)
 2012-07-31 01:01:18 +00:00
Sébastien Loriot d2b5143ab7 fix compilation issue on linux 2012-07-30 08:16:36 +00:00
Ílker Yaz 3b3df1e417 Comments in Expectation_maximization. 2012-07-26 00:35:37 +00:00
Ílker Yaz 7ab40cfe7a Code review. 
SDF Calculation is separated from Surface_mesh_segmentation (more compact design).
K-means clustering is 'heavily' commented in Doxygen style.
 2012-07-24 23:58:36 +00:00
Ílker Yaz 6c28442322 Mostly code review. 2012-07-18 23:33:34 +00:00
Ílker Yaz acd80fa21e Cast more rays if accepted rays after outlier removal are below some threshold. 
Graph-cut experimets for optimization.
Sampling methods are removed (other than Vogel).
(a not for me: benchmark result-10)
 2012-07-17 23:35:51 +00:00
Ílker Yaz c6b47c931c Smoothing approaches. 2012-07-12 11:54:15 +00:00
Ílker Yaz 3e25f4267f A new cone sampling approach, 
Automatic estimation of number of clusters (experiments)
Removed two outlier removal functions (one remains).
 2012-07-09 18:39:30 +00:00
Ílker Yaz 9ace58d7d5 EM - log-sum-exp trick addition. 2012-07-05 00:19:28 +00:00
Ílker Yaz 23465d67a2 Demo update 
K-means: implemented k-means++ for initialization (just for try)
 2012-06-28 17:31:50 +00:00
Ílker Yaz e7e45a3587 Additions to segmentation, and parameter adjustments. 2012-06-26 00:25:40 +00:00
Ílker Yaz e130186592 Some experimental code (for graph-cut), and additions to other source files. 2012-06-21 23:24:01 +00:00
Sébastien Loriot d0e208d165 missing typename + CGAL::max missing include? 2012-06-21 07:11:01 +00:00
Ílker Yaz 14a1fad644 A few additions to graph-cut, and EM. 2012-06-20 19:08:32 +00:00
Ílker Yaz 8e0538d2c7 First version of alpha expansion graph cut. 2012-06-19 18:17:19 +00:00
Ílker Yaz 9d28b10663 Alpha_expansion_graph_cut includes simple graph-cut only. 2012-06-18 21:24:40 +00:00
Ílker Yaz 3b2fd53b48 AABB traversal traits: additions for 'return closest' trait. 2012-06-15 22:35:45 +00:00
Ílker Yaz daf1187c0d Profile function for providing info about AABB - ray/segment intersections. 2012-06-14 15:38:10 +00:00
Ílker Yaz f66b998a45 Another function for calculating dihedral angles, 
(will be reduced to one function)
 2012-06-14 10:08:42 +00:00
Sébastien Loriot 3d6995b23b add a switch to shoot only rays 2012-06-14 07:17:01 +00:00
Ílker Yaz 5e3da7d5fc commented lines - (not changing anything at all, just for internal use). 2012-06-13 19:50:59 +00:00
Ílker Yaz 5819ab029f Addition for using segments for SDF calculation. 2012-06-13 17:28:47 +00:00
Sébastien Loriot 17eedd3969 new AABB_traits that make a do_intersect before intersection 
that speed up the run time.
 2012-06-13 09:09:19 +00:00
Sébastien Loriot 076dc28e3b revert modifications in AABB_tree package and put them in a dedicated file for the package 2012-06-13 08:37:52 +00:00
Ílker Yaz 17b1662b4f EM - now just using matrix-based algorithm. 2012-06-12 18:06:23 +00:00
Ílker Yaz 87ad1a4f8a A few more small changes. 2012-06-12 15:51:09 +00:00
Ílker Yaz ed6a0b5c36 example for segmentation algorithm. 2012-06-12 15:21:49 +00:00
Ílker Yaz e16ef4c0ac small changes considering Andreas's comments 2012-06-12 15:06:13 +00:00
Andreas Fabri 16ce6302fb some minor comments on the code, Best regards, andreas 2012-06-12 14:02:15 +00:00
Sébastien Loriot 91bf02acc1 missing typename 2012-06-12 12:04:09 +00:00
Ílker Yaz 4e06dc8221 uncomment header includes 2012-06-12 09:35:53 +00:00
Ílker Yaz 6fd7deecc9 Forgotten comments - removed 2012-06-11 18:27:06 +00:00
Ílker Yaz 299b48fcfb forgotten line - added in dihedral angle computation. 2012-06-11 18:25:49 +00:00
Ílker Yaz d04a716854 Dihedral angle computation, with concave filtering. 2012-06-11 18:20:29 +00:00
Ílker Yaz 8aa3d37806 EM - using probability-matrix (center x point), a faster implementation (nearly 2x). 2012-06-08 18:48:26 +00:00
Ílker Yaz b96af69120 internal code left uncommented - commented. 2012-06-08 06:49:35 +00:00
Ílker Yaz 915b71b951 Filtered traversal for AABB - just a sketch implementation with a lot of assumptions. 2012-06-07 18:14:52 +00:00
Ílker Yaz 11a35afb12 Several modifications in segmentation, EM, k-means: 
segmentation : moving center points which falls wrong side of the facet.
EM: random initialization
 2012-06-07 12:21:02 +00:00
Ílker Yaz 66d4234134 correction - 2012-06-05 17:29:38 +00:00
Ílker Yaz a9215c5c00 small modifications on k-means and segmentation, random initialization is added in EM. 2012-06-05 13:11:44 +00:00
Sébastien Loriot 84334e6bc1 renaming 2012-06-05 09:35:00 +00:00
Sébastien Loriot 4899778c41 remove warnings and compilation issue on linux 2012-06-05 09:27:37 +00:00
Sébastien Loriot ba86b462b6 remove warnings and compilation errors on linux 2012-06-05 07:15:39 +00:00
Ílker Yaz 26ea633931 Demo commit. 2012-06-04 17:11:43 +00:00
Ílker Yaz 203905730f Mostly code review + a few small addition to segmentation 2012-06-01 18:33:53 +00:00
Ílker Yaz ae1b4eb61f some modifications on EM, first version of k-means clustering. 2012-05-31 16:30:18 +00:00
Sébastien Loriot bbda7671d8 fix for linux 2012-05-30 08:13:02 +00:00
Ílker Yaz 1a97c50d10 reversing changes. 2012-05-29 23:10:23 +00:00
Ílker Yaz e96059b6f9 Adding typename keyword. 2012-05-29 23:05:07 +00:00
Ílker Yaz 83b5c4b029 First commit of EM, also several changes in segmentation 2012-05-29 19:06:30 +00:00
Sébastien Loriot 2d597b30bd add comments 
linux compilation fix
 2012-05-29 12:34:57 +00:00
Ílker Yaz 98aa5931b6 Several changes in Surface_mesh_segmentation.h 2012-05-27 22:34:14 +00:00
Sébastien Loriot ffb56ac632 renaming 2012-05-24 06:11:03 +00:00
Ílker Yaz d2e22d67f6 5/23/2012 - First Version of Surface_mesh_segmentation.h 2012-05-23 20:32:33 +00:00
Sébastien Loriot e5911d8d3a example added 2012-05-20 21:53:23 +00:00
Sébastien Loriot 2a89b621de add new directory for segmentation package 2012-05-20 21:03:00 +00:00