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3548 Commits

Author SHA1 Message Date
Sébastien Loriot 2c889a3b52 remove unused files 2021-08-26 11:43:58 +02:00
Sébastien Loriot 98e471849b moving files from internal to PKG/internal 2021-08-26 11:33:39 +02:00
Sébastien Loriot 1a65f4ca0a Merge remote-tracking branch 'cgal/5.3.x-branch' 2021-08-25 19:33:46 +02:00
Sébastien Loriot 3d77cbd804 Merge remote-tracking branch 'cgal/5.2.x-branch' into HEAD 2021-08-25 19:33:29 +02:00
Jane Tournois 5439dbd07e fix mismatch between two definitions of Mesher_level_conflict_status 
that were in different namespaces (CGAL and CGAL::Mesh_3)
 2021-08-25 19:32:13 +02:00
albert-github 72e2c7b27b Warnings Mesh_3 regarding non existing file (documentation) 
Currently we get a number of warnings when building the documentation for Mesh_3:
```
/home/cgal-testsuite/cgal_doc_build/CGAL-5.3.1-I-169/doc/Mesh_3/Mesh_3.txt:743: warning: unable to resolve reference to 'CGAL/Mesh_3/initialize_triangulation_from_labeled_image.h\' for \ref command
/home/cgal-testsuite/cgal_doc_build/CGAL-5.3.1-I-169/doc/Mesh_3/Mesh_3.txt:801: warning: unable to resolve reference to 'Mesh_3/random_labeled_image.h\' for \ref command
/home/cgal-testsuite/cgal_doc_build/CGAL-5.3.1-I-169/doc/Mesh_3/Mesh_3.txt:817: warning: unable to resolve reference to 'CGAL/Mesh_3/initialize_triangulation_from_gray_image.h\' for \ref command
```
Note the backslash at the end of the file name.

Most likely an attempt was made to escape the dot to not have it as part of the filename, though at least in doxygen 1.8.13 a closing dot was not seen as part of the filename.
Looking at the other escape character of doxygen: the commercial at sign, this was apparently working as escape in the filename as well, though in doxygen 1.8.15 this was not the case anymore either.
During one of the last changes also the backslash lost this possibility for this case and this is now consistent.

The current change (removing the backslashes) doesn't look like to alter the behavior for the 1.8.13 and master version in respect to CGAL.
 2021-08-15 20:32:45 +02:00
Maxime Gimeno a3d1765ab4 Merge remote-tracking branch 'cgal/master' into CGAL-Clean_up_boost_versions-maxGimeno 2021-07-19 14:18:40 +02:00
Sebastien Loriot 40f507a1f1
Merge pull request #5800 from MaelRL/SS-Doc_fixes-GF 
Harmonization of some IO stream documentation
 2021-07-19 07:56:48 +02:00
Laurent Rineau 5896af7960 Fix indentation 2021-07-13 11:49:51 +02:00
Laurent Rineau f8a2878b0c Port Mesh_3 to oneAPI-TBB 
The work was already mostly done in PR #4892, but there was still two
issues:
  - `tbb::parallel_do` has been removed, and `tbb::parall_for_each`
  was to be used instead,
  - the support for `tbb_hasher` has been removed.

This time, I have tested in a container were
intel-oneapi-tbb-common-devel-2021.3.0-2021.3.0-511.noarch was
installed, but not tbb version 2020.
 2021-07-13 11:38:43 +02:00
Mael Rouxel-Labbé 78ff9185b3 Harmonize ASCII usage across all packages 2021-06-23 23:34:32 +02:00
Laurent Rineau 6a9061668c Merge pull request #5756 from albert-github/feature/bug_redirects 
Correction of hyperlinks
 2021-06-16 15:06:08 +02:00
Laurent Rineau 20dcc7b57e Merge pull request #5762 from janetournois/Mesh_3-fix_warning_pr5587-jtournois 
Mesh_3 - fix missing initializer warning
 2021-06-16 15:04:57 +02:00
Laurent Rineau d74d4745df Merge pull request #5762 from janetournois/Mesh_3-fix_warning_pr5587-jtournois 
Mesh_3 - fix missing initializer warning
 2021-06-16 15:03:45 +02:00
Jane Tournois b69f643239 add missing param in initializer list 2021-06-04 15:58:26 +02:00
albert-github 2a54687e77 Correction of hyperlinks 
The link checker gave a number of redirects and incorrect links.
- the redirects have been solved ass far as possible
- the incorrect links have been checked and corrected where possible, others  have been reported through issues;
 2021-06-04 13:52:14 +02:00
Maxime Gimeno ab182dd46a Merge remote-tracking branch 'cgal/master' into CGAL-Clang_tidy_new_pass-maxGimeno 2021-05-21 14:04:07 +02:00
Maxime Gimeno 413b711ee2 Example pass 2021-05-20 15:07:40 +02:00
Laurent Rineau 59a0da4f13 Merge pull request #5692 from maxGimeno/CGAL_cpp11_atomic_and_threads-maxGimeno 
CGAL:: Use std atomic and threads

# Conflicts:
#	Arrangement_on_surface_2/include/CGAL/Arr_counting_traits_2.h
 2021-05-19 17:23:53 +02:00
Laurent Rineau 82bec8a1d6 Merge pull request #5692 from maxGimeno/CGAL_cpp11_atomic_and_threads-maxGimeno 
CGAL:: Use std atomic and threads

# Conflicts:
#	Arrangement_on_surface_2/include/CGAL/Arr_counting_traits_2.h
 2021-05-19 17:11:37 +02:00
Laurent Rineau 26ad68e486 Merge pull request #5649 from sloriot/CGAL-no_boost_shared_ptr 
Replace internal use of boost shared_ptr
 2021-05-18 18:14:12 +02:00
Maxime Gimeno 17ac255108 Fix calls t cpp11:atomic stuff 2021-05-18 15:43:59 +02:00
Maxime Gimeno 393ae7dae6 Clean-up boost_version reqs 2021-05-12 15:03:53 +02:00
Maxime Gimeno f6cefea66a Add required constructors to Mesh_vertex_base_3<Parallel_tag> 2021-05-11 09:21:58 +02:00
Maxime Gimeno 1b5b61ab0a Add include 2021-05-07 12:17:32 +02:00
Maxime Gimeno 9872ac9cf8 Replace tbb::atomic 2021-05-07 11:16:50 +02:00
Maxime Gimeno 3e03d50b8a replace usages of CGAL::cpp11::atomic and thread by std:: calls 2021-05-07 11:10:30 +02:00
Maxime Gimeno e9b7595fff Deprecate CGAL headers for threads, atomic and result_of, and move their content to config.h as fallback 2021-05-07 11:09:24 +02:00
Sébastien Loriot 4e519a3c7a move documented IO functions in IO namespace 2021-05-05 13:15:37 +02:00
Sébastien Loriot 12f0e412b5 write_vtu -> write_VTU 2021-05-04 15:12:36 +02:00
Sébastien Loriot 22be8671f7 move read_vtk_image_data to IO 2021-05-04 14:59:28 +02:00
Sébastien Loriot fb6f703b55 IO namespace for files in IO directories 2021-05-04 14:36:06 +02:00
Sébastien Loriot 70058db9b7 add IO namespace for Mesh_3 package 2021-05-03 15:39:07 +02:00
Sébastien Loriot 1faa0e2992 replace internal use of boost::shared_ptr by std::shared_ptr 2021-04-28 10:55:26 +02:00
Sébastien Loriot 39367c2313 Merge remote-tracking branch 'cgal/5.2.x-branch' 2021-04-17 11:14:29 +02:00
Sébastien Loriot cbd95907cd Merge remote-tracking branch 'cgal/5.1.x-branch' into HEAD 2021-04-17 11:11:28 +02:00
Sebastien Loriot cec1f67cdd
Merge pull request #5580 from janetournois/Mesh_3-feature_protection_fixes-GF 
Mesh_3 - fix feature protection for images
 2021-04-17 11:05:33 +02:00
Sebastien Loriot 925ff14ad9
Merge pull request #5587 from janetournois/Mesh_3-fix_polylines_on_cube_detection-jtournois 
Mesh_3 - fix features detection on image bounding box
 2021-04-17 11:02:16 +02:00
Sebastien Loriot b7323389c7
Merge pull request #5622 from maxGimeno/CMake-Update_versions_in_scripts-maxGimeno 
Update maximum cmake versions
 2021-04-17 10:58:14 +02:00
Sebastien Loriot 0c6404d1bc
Merge pull request #5596 from sloriot/Doc-precompiled_demos 
Add doc for precompiled demos
 2021-04-17 10:57:02 +02:00
Sebastien Loriot e3020f1c64
Merge pull request #5526 from janetournois/Mesh_3-add_determinism_test-jtournois 
Mesh_3 - more testing of determinism
 2021-04-17 10:52:30 +02:00
Maxime Gimeno c49152359c update max version of cmake and announce the new minimal in CHANGE.md 2021-04-15 15:08:54 +02:00
Sébastien Loriot 350b9172c5 replace %CGAL by \cgal (but in titles) 2021-04-11 14:52:01 +02:00
Jane Tournois 0f4559a5e2 add missing default value 
attempt to fix "maybe uninitialized" warning
 2021-04-06 17:39:54 +02:00
Jane Tournois 7574751d4f not all points on the edges of the cube are corners 
differentiate between corner vertices and edge vertices
corner vertices are forced to be "terminal" in the call
to split_graph_into_polylines() hence leading to
as many polylines as segments on image bbox edges
 2021-04-06 14:59:49 +01:00
Laurent Rineau 1b54449dc5 Merge pull request #4878 from danston/Kernels-decltypes-danston 
Improve decltype/result_of/invoke_result
 2021-04-06 15:13:21 +02:00
Laurent Rineau 53491eca02 Merge pull request #5550 from maxGimeno/Eigen_fixes_in_cmakelists-5-2-maxGimeno 
Fix Eigen in CMakeLists 5.2
 2021-04-06 15:12:58 +02:00
Jane Tournois 1b323b8599 when aabb_tree is empty, there are no patches 
hence no incident patches
we only refer to an aabb tree of curves
 2021-04-02 14:44:26 +02:00
Laurent Rineau 0cb823656a Merge pull request #5463 from janetournois/Mesh_3-example_initialization_cc_in_gray_images-jtournois 
Mesh 3 - connected components initialization for 3D gray images
 2021-03-24 15:05:29 +01:00
Maxime Gimeno 5aa763e055 Don't indent and use return() 2021-03-23 14:57:15 +01:00