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Author SHA1 Message Date
Andreas Fabri 4250b800b9 Cartesian -> Simple_cartesian 2013-08-26 17:06:42 +02:00
Laurent Rineau bc03aaf30b Put doc/ in the global dont_submit file 2013-08-20 10:57:03 +02:00
Sébastien Loriot b352ca7410 Merge branch 'Surface_modeling-new_package-GF-old' into Surface_modeling-new_package-GF 2013-08-06 16:34:47 +02:00
Sébastien Loriot d282ade623 use \cgalCite instead of \cite 
using perl -i -pe 's/\\cite\s*{?([a-zA-Z0-9:-]+)}?/\\cgalCite{$1}/g'
 2013-08-05 18:25:26 +02:00
Sébastien Loriot b2ef3b8673 Merge branch 'doc-remove_gif-local' 
Successfully test in CGAL-4.3-Ic-102

This commit fixes a few issues in the doxygen documentation and in particular
the figure for the generation of latex doc.

Approved by the interim release manager

xplain why this merge is necessary,
 2013-07-26 17:50:07 +02:00
Sébastien Loriot 2dfe8a3d73 workaround for a doxygen bug: remove space after /!* to avoid a verbatim env 
this happens if you have an empty line or the text directly after /!*
to find them in the generated documentation, grep for "pre class=\"fragment\""
(a few of them are legitimate however)
 2013-07-25 14:58:53 +02:00
Sébastien Loriot 74a1ac055e remove pdf files from doxygen doc include path 2013-07-25 11:15:18 +02:00
Sébastien Loriot d9cf655db1 Merge branch 'Surface_modeling-new_package-GF-old' into Surface_modeling-new_package-GF 
Conflicts:
	Documentation/doxyassist.xml
	Documentation/header_package.html
	Polyhedron/demo/Polyhedron/CMakeLists.txt
 2013-06-27 08:55:59 +02:00
Sébastien Loriot 716f87d2d7 rename Hidden_type to unspecified_type and update its description 2013-06-13 18:48:58 +02:00
Philipp Möller 895245426a Fix some errors introduced by adding the titles 2013-05-30 18:09:42 +02:00
Ross Hemsley 4d9caf3763 Added names that were missing into the Doxyfile.in entries. 
Also modified Installation/CMakeLists.txt to push the version number variable to the parent level
so that it can be accessed by the documentation
 2013-05-30 17:55:43 +02:00
Philipp Möller 4d469821f7 Generated Doxyfile.in and dependencies 2013-05-30 14:13:47 +02:00
Sébastien Loriot 2ac05c6d95 fix warnings detected by doxygen 1.8.4 2013-05-24 12:49:02 +02:00
Alexandros Konstantinakis-Karmis 3b1d281efb Abbreviations trigger end of \brief description 
Fixes bug #15482:
https://gforge.inria.fr/tracker/index.php?func=detail&aid=15482&group_id=52&atid=13845
 2013-03-13 11:58:56 +01:00
Sébastien Loriot e991fe72ad really add last missing classified reference manual pages 2013-03-13 10:57:01 +01:00
Andreas Fabri cfd69b1490 long/int -> size_t 2013-02-27 11:44:55 +01:00
Laurent Rineau 2d8da664a3 Merge branch 'CGAL-fix_warnings-gdamiand' 
Conflicts:
	.gitignore
	Skin_surface_3/examples/Skin_surface_3/CMakeLists.txt
 2013-02-22 13:02:37 +01:00
Laurent Rineau 26a7e70785 New license.txt files (eol changes) 
The new version 2.13.0 of licensecheck has changed the spaces at eol.
 2013-02-19 16:46:39 +01:00
Andreas Fabri 190da7bf0d Merge branch 'Surface_modeling-new_package-GF' of ssh://scm.cgal.org/var/git/cgal into Surface_modeling-new_package-GF 2013-02-11 19:00:56 +01:00
Sébastien Loriot c8fb9844aa Merge branch 'gsoc2011-surface-modeling-Yzju' into Surface_modeling-new_package-GF 
Conflicts:
	.gitattributes
	AABB_tree/doc_tex/AABB_tree_ref/AABBGeomTraits.tex
	AABB_tree/doc_tex/AABB_tree_ref/AABBTraits.tex
	AABB_tree/dont_submit
	AABB_tree/test/AABB_tree/AABB_test_util.h
	AABB_tree/test/AABB_tree/aabb_correctness_triangle_test.cpp
	Arrangement_on_surface_2/include/CGAL/Arr_point_location/Trapezoidal_decomposition_2_impl.h
	Boolean_set_operations_2/examples/Boolean_set_operations_2/bezier_traits_adapter2.cpp
	Installation/cmake/modules/CGAL_CreateSingleSourceCGALProgram.cmake
	Installation/cmake/modules/CGAL_Macros.cmake
	Installation/cmake/modules/CGAL_SetupDependencies.cmake
	Linear_cell_complex/examples/Linear_cell_complex/linear_cell_complex_3_triangulation.cpp
	Maintenance/svn_server/hooks/Mail/Sender/CType/Ext.pm
	Polyhedron/demo/Polyhedron/CMakeLists.txt
	Polyhedron/demo/Polyhedron/Polyhedron_demo_normal_estimation_plugin.cpp
	Polyhedron/demo/Polyhedron/Polyhedron_demo_point_set_outliers_removal_plugin.cpp
	Polyhedron/demo/Polyhedron/data/cow.off
	Principal_component_analysis/test/Principal_component_analysis/linear_least_squares_fitting_segments_3.cpp
	Surface_mesh_parameterization/examples/Surface_mesh_parameterization/CMakeLists.txt
	Surface_reconstruction_points_3/include/CGAL/Poisson_reconstruction_function.h
 2013-02-07 17:00:00 +01:00
Andreas Fabri 13bac84716 less warnings in various packages 2013-02-01 10:27:07 +01:00
Sébastien Loriot 571f782910 remove extra . 2013-01-02 15:44:57 +01:00
Andreas Fabri 54a9101463 polish Mesh_3 2012-12-28 11:26:28 +01:00
Philipp Möller 75f69570dc Change the titles of mainpages to "User Manual" 
This leads to a slightly odd result in the search for "User Manual",
but makes the pages themselves more consistent.
 2012-12-13 14:47:09 +01:00
Sébastien Loriot 7d20531b1d Convert remaining CRLF files to LF 2012-12-04 17:09:28 +01:00
Sébastien Loriot fadb9c6083 Convert all CRLF files to LF 2012-12-04 16:13:45 +01:00
Philipp Möller e271a13a33 Document files in Surface_mesh_parameterization 2012-12-04 14:25:00 +01:00
Sébastien Loriot 4ec9529581 Merge branch 'doxy-port-pmoeller' 
Conflicts:
	.gitattributes
	Surface_reconstruction_points_3/include/CGAL/Poisson_reconstruction_function.h
	Surface_reconstruction_points_3/include/CGAL/Reconstruction_triangulation_3.h
	Surface_reconstruction_points_3/include/CGAL/k_nearest_neighbor.h
 2012-11-27 10:05:41 +01:00
Sébastien Loriot 9576be3c3b add doc in dont_submit 2012-11-27 08:42:02 +01:00
Sébastien Loriot 920eb63882 backporting documentation changes of master@9fcc5b57 into doxy-port-pmoeller 
Conflicts:
	Arrangement_on_surface_2/doc/Arrangement_on_surface_2/CGAL/Arr_linear_traits_2.h
	Installation/doc_tex/Installation/usage.tex
	Kernel_23/doc/Kernel_23/CGAL/Projection_traits_xy_3.h
	Mesh_2/doc/Mesh_2/Concepts/ConformingDelaunayTriangulationTraits_2.h
	Spatial_searching/doc/Spatial_searching/CGAL/Incremental_neighbor_search.h
	Spatial_searching/doc/Spatial_searching/CGAL/K_neighbor_search.h
	Spatial_searching/doc/Spatial_searching/CGAL/Orthogonal_incremental_neighbor_search.h
 2012-11-23 22:54:31 +01:00
Sébastien Loriot 7cd0e93fa9 Revert "Merge the changes to ccPrecond and ccPostcond that have been in" 
This reverts commit b529971917.

Conflicts:
	Approximate_min_ellipsoid_d/doc_tex/Bounding_volumes_ref/Approximate_min_ellipsoid_d.tex
	Matrix_search/doc_tex/Polytope_distance_d_ref/spec_all_furthest_neighbors.tex
	Min_annulus_d/doc_tex/Bounding_volumes_ref/Min_annulus_d.tex
	Min_circle_2/doc_tex/Bounding_volumes_ref/Min_circle_2.tex
	Min_ellipse_2/doc_tex/Bounding_volumes_ref/Min_ellipse_2.tex
	Min_quadrilateral_2/doc_tex/Bounding_volumes_ref/spec_oops.tex
	Min_sphere_d/doc_tex/Bounding_volumes_ref/Min_sphere_d.tex
	Min_sphere_of_spheres_d/doc_tex/Bounding_volumes_ref/MinSphereOfSpheresTraits.tex
	Min_sphere_of_spheres_d/doc_tex/Bounding_volumes_ref/Min_sphere_of_spheres_d.tex
	Surface_mesh_parameterization/doc_tex/Surface_mesh_parameterization_ref/Taucs_matrix.tex
	Surface_mesh_parameterization/doc_tex/Surface_mesh_parameterization_ref/Taucs_symmetric_matrix.tex
	Triangulation_2/doc_tex/Triangulation_2_ref/Constrained_triangulation_2.tex
	Width_3/doc_tex/Polytope_distance_d_ref/Width_3.tex
 2012-11-23 18:04:33 +01:00
Sébastien Loriot bfca42081d add missing backquotes in cgalModels 2012-11-23 09:55:55 +01:00
Sébastien Loriot ae8362b7d6 replace \cgalModels ::FOO by \cgalModels `FOO` 
using:
 perl  -pi -e 's/\\cgalModels\s+::([A-Za-z0-9_:]+)\s*$/\\cgalModels `$1`\n/'
 2012-11-23 09:37:53 +01:00
Sébastien Loriot 8d741d504d remove % in section name 2012-11-14 16:10:15 +01:00
Sébastien Loriot 128b02abb8 update CGAL custom doxygen macros 
corresponds to a run of the script Documentation/conversion_tools/rename_macros.sh
+manual edit of doxyassist.xml and pkglist_filter.py
 2012-11-14 00:31:05 +01:00
Sébastien Loriot 5ee1081f92 using cgal macros for all figures 2012-11-08 17:17:29 +00:00
Sébastien Loriot ae159cbdf3 replace markup #, ##, ### by \section, \subsection and \subsubsection 
(script replacement)
 2012-11-06 22:02:15 +00:00
Alex Tsui a11d3408d6 Fixed a bug to properly check whether a facet is seaming. 2012-11-06 20:12:41 +00:00
Alex Tsui c06c1c09d9 Fixed a bug where we try to deref a reference in get_decorated_mesh(). 2012-11-06 19:45:28 +00:00
Andreas Fabri 7a6634b5a7 No need for CGAL:: in user manuals 2012-10-31 20:11:16 +00:00
Philipp Möller 31a3c07418 Turn \refines :: into \refines `X` globally 2012-10-25 09:48:39 +00:00
Sébastien Loriot 3c8f53b7bf fix reference manual 2012-10-22 15:48:42 +00:00
Sébastien Loriot 691950a973 fix user and ref main pages 2012-10-22 15:44:23 +00:00
Sébastien Loriot e7780a8b30 fix eigen wrapper doc 2012-10-22 15:43:46 +00:00
Sébastien Loriot 0dfa117281 regenerate concepts using Phillip's tool 
make vector and matrix nested classes
 2012-10-22 15:43:04 +00:00
Sébastien Loriot b4724242d1 remove taucs dependency 2012-10-19 17:30:09 +00:00
Sébastien Loriot 284bac7a38 add Eigen wrappers doxygen doc 2012-10-19 17:20:27 +00:00
Sébastien Loriot 59b4985eab work on concept 2012-10-19 17:03:17 +00:00
Philipp Möller 31e9eadf8b Fix all PackageDescriptions to a newer layout 2012-10-19 15:52:31 +00:00
Sébastien Loriot 72d49c9c11 merge from next 2012-10-19 15:31:44 +00:00
Sébastien Loriot 9da7cc390f remove some taucs+enhance look 2012-10-19 15:22:31 +00:00
Sébastien Loriot 44f980f5c9 remove last things mentionning taucs in the documentation 2012-10-18 14:10:30 +00:00
Sébastien Loriot ba2b7aef65 remove any reference to taucs 2012-10-18 13:46:11 +00:00
Andreas Fabri 4d77463415 No need for 3rd party OpenNL 2012-10-18 11:53:12 +00:00
Andreas Fabri b8b7a5dad3 get rid of spurious XX 2012-10-03 17:02:54 +00:00
Philipp Möller bc48dfe5a0 Be consistent about author/authors 2012-10-03 16:40:16 +00:00
Philipp Möller c9fdbf3edb Add an anchor to each level one heading, so we get a nice tree in the 
user manuals.
 2012-10-02 11:53:01 +00:00
Philipp Möller 37778547bf Fix example to point to paths similar to a flat layout 2012-10-01 18:02:44 +00:00
Philipp Möller 9d96057636 Add PkgDependsOn to the package summary 2012-09-27 11:13:37 +00:00
Philipp Möller b64ba48134 The changes to move the package overview labels into the 
PackageDescription.
 2012-09-25 17:17:49 +00:00
Philipp Möller 8feb3c58b5 Change folder layout to match the general scheme. 2012-09-24 09:55:59 +00:00
Andreas Fabri b7e754923a polish 2012-09-24 09:52:38 +00:00
Philipp Möller e54098fb57 Throw out left over Classified files and move their content if 
necessary.
 2012-09-20 16:29:19 +00:00
Philipp Möller 1954eff3d6 * build normalized mainpage anchors 
* better naming for Pkg commands
* User and Reference Manual links from the PackageOverview
 2012-09-20 15:30:03 +00:00
Philipp Möller 1b3a78a08f Salvage the demo information from the old package description. 2012-09-20 13:30:49 +00:00
Andreas Fabri bb9b9f1840 link, unlink 2012-09-14 15:54:30 +00:00
Andreas Fabri 03c9ef21fc less state-of-the-art 2012-09-14 15:34:42 +00:00
Andreas Fabri 65ac45eb87 \cite, more backquotes, and less strategy 2012-09-14 15:30:20 +00:00
Andreas Fabri af2b0c2faf many changes 2012-09-14 14:51:04 +00:00
Andreas Fabri 2bcbae97ba many changes 2012-09-14 14:50:52 +00:00
Philipp Möller 5bed1b15c5 Add basic Surface_mesh_parameterization, grouping and some moves to 
internal are still missing
 2012-09-14 11:15:18 +00:00
Philipp Möller 864aebe2e5 Merge next. 
This commit also updates the respective mock-headers when the
corresponding .tex documentation has changed. This has been the case for:

AABB_tree/doc_tex/AABB_tree_ref/AABBGeomTraits.tex
AABB_tree/doc_tex/AABB_tree_ref/AABBTraits.tex
AABB_tree/doc_tex/AABB_tree_ref/AABB_traits.tex
Mesh_3/doc_tex/Mesh_3_ref/parameters_features.tex
Mesh_3/doc_tex/Mesh_3_ref/parameters_no_features.tex
Number_types/doc_tex/NumberTypeSupport_ref/Interval_nt.tex
Number_types/doc_tex/NumberTypeSupport_ref/Lazy_exact_nt.tex
Spatial_searching/doc_tex/Spatial_searching_ref/Search_traits_2.tex
Spatial_searching/doc_tex/Spatial_searching_ref/Search_traits_3.tex
Triangulation_2/doc_tex/Triangulation_2_ref/Constrained_Delaunay_triangulation_2.tex
 2012-09-12 14:14:22 +00:00
Laurent Rineau 2db4effa7e CMake: Fix the handling of cmake_policy 
That is a followup-to my commit last year:
  | ------------------------------------------------------------------------
  | r63198 | lrineau | 2011-04-28 19:45:22 +0200 (Thu, 28 Apr 2011) | 5 lines
  | 
  | Try to fix my last revision about cmake_policy, with CMake-2.6.x
  | 
  | CMake gives an error if one tries to use cmake_policy(VERSION x.y.z) if
  | x.y.z is greater than the current CMake version.
  | 
  | ------------------------------------------------------------------------

The following check:
  if("${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION}" VERSION_GREATER 2.6)
is useless just after a call to:
 cmake_minimum_required(VERSION 2.6.2)



The script used to fix that was:


#!/usr/bin/env perl

$replacement=<<'END';
if("${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION}.${CMAKE_PATCH_VERSION}" VERSION_GREATER 2.8.3)
  cmake_policy(VERSION 2.8.4)
else()
  cmake_policy(VERSION 2.6)
endif()
END

while(<>) {
    if(/if\("\${CMAKE_MAJOR_VERSION}.\${CMAKE_MINOR_VERSION}" VERSION_GREATER 2.6\)/) {
        while(<>) {
            if(/^endif\(\)/) {
                print "$replacement";
                while(<>) {
                    print;
                }
                exit 0
            }
        }
    }
    print;
}
 2012-08-22 12:35:03 +00:00
Laurent Rineau c59f8abc03 dos2unix on a CMakeLists.txt 2012-08-22 12:24:54 +00:00
Eric Berberich 357d6258f5 cmake's link_libraries is deprecated 
removed almost all occurenced (missing UseFiles). While
doing so, some CMakeLists.txt could also be simplified. In fact
many more CMakeLists.txt can be simplified, in one of two ways:
1) add external libs to CGAL_3RD_PARTY_LIBRARIES and
2) call cgal_create_single_source_program
 2012-08-03 22:32:39 +00:00
Sébastien Loriot ff0ae4ac7b merge from next 2012-08-03 13:34:14 +00:00
Laurent Rineau 4c3e1c3138 Fix mixed eol styles 2012-08-02 13:35:03 +00:00
Sébastien Loriot 5b59f2ad8d merge from next 2012-07-30 10:25:24 +00:00
Marc Glisse 10d791295d complex.h may #define complex :-( 2012-07-28 10:47:13 +00:00
Marc Glisse 82351c83c0 Missing standard include. 2012-07-28 06:57:31 +00:00
Philipp Möller 495fac8ea1 Merge from next 2012-07-27 17:58:52 +00:00
Marc Glisse 4d4f9adb55 Missing standard includes. 2012-07-27 12:05:53 +00:00
Sébastien Loriot 40f237b70d merge from next 2012-07-26 07:24:02 +00:00
Sébastien Loriot e702f20986 Eigen 3-1 is out. 
Require Eigen 3.1.0 in CMake scripts.
 2012-06-27 12:38:32 +00:00
Philipp Möller b529971917 Merge the changes to ccPrecond and ccPostcond that have been in 
features/doxy-pmoeller and add changes for ccRequires on top of it.

ATTN: This changeset should be unmerged before the whole branch goes
      back into next.
 2012-06-20 13:57:36 +00:00
Laurent Rineau 5eb0734d02 Remove a warning: var set but not used 2012-04-16 15:24:14 +00:00
Philipp Möller 5e15466696 BUGFIX: Memory leak in Parameterization_mesh_feature_extractor 
Parameterization_mesh_feature_extractor wasn't cleaning up the BorderS
it allocated.
 2012-04-16 14:36:03 +00:00
Sébastien Loriot 75e23bd978 merge from next 2012-03-26 13:41:01 +00:00
Sébastien Loriot c70cff6454 document default solver+ add more space in example 2012-01-20 09:28:59 +00:00
Sébastien Loriot 062869883e fix typo an unify solver descriptions 2012-01-20 09:16:30 +00:00
Sébastien Loriot bff8608b53 Eigen is now the recommanded sparse solver. 
Make this clearer on the surface mesh parameterization page
 2012-01-20 08:12:57 +00:00
Laurent Rineau 3239da640d merge changes from next; 2012-01-17 10:28:12 +00:00
Laurent Rineau a37c74d534 Add license files, per package 2012-01-16 15:54:22 +00:00
Sébastien Loriot cee248ca54 merge from next 2012-01-13 18:48:35 +00:00
Laurent Rineau 2af2160942 Turn \ccLicenseQPL into \ccLicenseGPL 2012-01-13 17:13:55 +00:00
Laurent Rineau 8f59fd9592 Turn QPL into LGPLv3+ 2012-01-13 16:33:35 +00:00
Sébastien Loriot 7b047f7f8f document the solver() method of Eigen_solver_traits that give access to the solver of Eigen. 2011-12-27 16:53:44 +00:00
Sébastien Loriot 5de506608d *explicit overloads for Eigen_vector::operator= 
*include Taucs header if detected in param. test
 2011-12-27 10:08:39 +00:00
Sébastien Loriot 4a96d66d58 *add missing add_coef to Eigen_sparse_matrix 
*update doc example of Eigen_solver_traits
*update CMakeLists.txt and examples/test to use Eigen instead of Taucs (when available)
 2011-12-22 19:20:19 +00:00
Sébastien Loriot 9b75cd5506 require Eigen 3.1 or greater 2011-12-22 16:06:37 +00:00