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Author SHA1 Message Date
Laurent Rineau fa7393cb15 Merge pull request #5389 from sloriot/Mesh_3-fix_patch_id_map 
Clean and fix default facet patch id map
 2021-02-18 15:19:15 +01:00
Sébastien Loriot 98e48385e8 a RIGHT angle is also a corner 2021-02-17 15:49:48 +01:00
Sébastien Loriot 3b9dafb23b fix after BOOST_FOREACH -> for replacement 2021-02-17 15:49:30 +01:00
Jane Tournois 032ad19677 add custom initialization of gray image to user manual 
and re-organize to have both custom initializations (gray level and
segmented) together
 2021-02-15 16:27:40 +01:00
Jane Tournois 7c9e45206d add image_values_to_subdomain_indices parameter 2021-02-12 17:20:46 +01:00
Jane Tournois 4902b42f54 add example to mesh gray image with custom initialization 2021-02-12 16:56:33 +01:00
Jane Tournois 8e492aa4f6 add initialization by detection of connected components in gray level image 2021-02-12 16:53:45 +01:00
Sébastien Loriot 4bb0406240 do not include boost/bind.hpp (shouldn't be used anymore) + fix remaining bind 
(nasty using namespace boost!)
 2021-02-12 15:35:19 +01:00
Jane Tournois c13a7a855c take into account the translation tx, ty, tz in Get_point from an image 2021-02-12 15:25:24 +01:00
Laurent Rineau d7bc38f683 Take the translation TX/TY/TZ into account 2021-02-12 14:16:54 +01:00
Laurent Rineau e94c41714a Fix a compilation error 
The definition of `initialize_triangulation_from_gray_image`
required `initialize_triangulation_from_labeled_image` to be defined,
or at least declared.
 2021-02-12 14:15:56 +01:00
Jane Tournois 5e86781ad8 add code to detect connected components in gray-level images 2021-02-12 10:29:14 +01:00
Sébastien Loriot 5835698fe2 no ref on temporary 2021-02-10 15:42:29 +01:00
Dmitry Anisimov 81d9556707 Merge remote-tracking branch 'upstream/master' into Kernels-decltypes-danston 2021-02-10 10:06:45 +01:00
Laurent Rineau a735e849c0 Merge pull request #5152 from sloriot/CGAL-remove_bind 
Replace usages of boost::bind
 2021-02-05 16:14:04 +01:00
Laurent Rineau 4c947f0ee0 Merge pull request #5340 from danston/CGAL-clang_warnings_fix-danston 
Clang warnings fixed
 2021-02-05 16:10:37 +01:00
Laurent Rineau 1453294c74 Merge pull request #5376 from lrineau/Mesh_3-fix_mesh_implicit_domains.cpp-GF 
Fix examples/Mesh_3/mesh_implicit_domains.cpp
 2021-02-05 16:10:24 +01:00
Laurent Rineau 7e2ee4946d Merge pull request #5152 from sloriot/CGAL-remove_bind 
Replace usages of boost::bind
 2021-02-05 16:07:34 +01:00
Laurent Rineau 3d71b8e5f0 Merge pull request #5376 from lrineau/Mesh_3-fix_mesh_implicit_domains.cpp-GF 
Fix examples/Mesh_3/mesh_implicit_domains.cpp
 2021-02-05 16:07:22 +01:00
Sébastien Loriot f69be333f0 Merge remote-tracking branch 'cgal/5.2.x-branch' into CGAL-remove_bind 2021-01-29 18:44:50 +01:00
Sébastien Loriot bf128b3fda rename typedef to make clear it is a property map 2021-01-25 16:19:23 +01:00
Sébastien Loriot fd371ef96b refactor the facet patch id maps + update the default 2021-01-25 16:09:17 +01:00
Laurent Rineau f176529041 Merge pull request #5357 from sloriot/CGAL-boost_function_output-master 
Include non-deprecated header (master)
 2021-01-21 16:22:39 +01:00
Laurent Rineau 52bb68c012 Merge pull request #5356 from sloriot/CGAL-boost_function_output-5.2 
Include non-deprecated header (5.2)
 2021-01-21 16:18:55 +01:00
Laurent Rineau dce5ed14b7 Merge pull request #5355 from sloriot/CGAL-boost_function_output-5.1 
Include non-deprecated header (5.1)
 2021-01-21 16:09:39 +01:00
Laurent Rineau 6fe18d8068 Enhance the debugging tools in Mesh_3 2021-01-20 15:38:05 +01:00
Laurent Rineau ac875956a1 Fix examples/Mesh_3/mesh_implicit_domains.cpp 
The error was actually due to an mismatch between `CGAL_LINKED_WITH_TBB`
and `CGAL_CONCURRENT_MESH_3`.

For CGAL-5.3 we should clean that up! That code using `Parallel_tag`
without TBB should not compile, actually.

Fix for https://github.com/CGAL/cgal/issues/5375
 2021-01-20 15:38:05 +01:00
Sébastien Loriot bc161f2ae9 Merge 'CGAL-Eigen3_support-5.2' 2021-01-15 10:59:20 +01:00
Sébastien Loriot f4935dc199 Merge branch 'CGAL-Eigen3_support-5.1' 2021-01-15 10:54:02 +01:00
Sébastien Loriot eecb00534e fix macro name to be consistent with find_package 2021-01-15 10:43:34 +01:00
Sébastien Loriot ad911271a9 Merge commit '6594e7549bd70923990d86c31e2aa267a79bb629' into HEAD 2021-01-15 10:12:17 +01:00
Sébastien Loriot bdd4efe3b3 Merge commit 'efc0c525e8b' into HEAD 2021-01-15 10:06:56 +01:00
Sébastien Loriot efc0c525e8 include non-deprecated header 2021-01-15 10:02:00 +01:00
Dmitry Anisimov 269a47d773
Merge branch 'master' into CGAL-clang_warnings_fix-danston 2021-01-14 16:51:13 +01:00
Maxime Gimeno 5d2ad68148 Add new Dependences. ATTENTION BGL is propagated through the NPs in Stream_support 2021-01-08 15:58:46 +01:00
Dmitry Anisimov 086299c56e tetrahedral remeshing range loop analysis copy to ref and auto warnings fixed 2021-01-08 10:39:24 +01:00
Maxime Gimeno 3d1c41fd14 Merge remote-tracking branch 'cgal/master' into CGAL_IO-maxGimeno 2021-01-07 15:05:28 +01:00
Sébastien Loriot 2eb9908699 replace bind in Mesh_3 packages 2021-01-06 12:59:12 +01:00
Sébastien Loriot 361ef0cbbf simplify 2020-12-22 17:13:11 +01:00
Sébastien Loriot d1e1846f5e iterators are multipass 2020-12-22 16:55:25 +01:00
Laurent Rineau 34cde36fd9 Merge pull request #5209 from janetournois/Mesh_3-debug_global_optimizers-jtournois 
Mesh_3 global optimizers - improve projection to surface
 2020-12-09 16:14:35 +01:00
Laurent Rineau 9dcc0ef7e8 Merge pull request #5222 from maxGimeno/Tet_remesh-Fix_tbb-maxGimeno 
Mesh_3: Fix std::atomic wrong function

# Conflicts:
#	Tetrahedral_remeshing/examples/Tetrahedral_remeshing/CMakeLists.txt
 2020-12-09 16:14:19 +01:00
Laurent Rineau 3fc0ba4435 Merge branch '5.1.x-branch' into 5.2.x-branch 
# Conflicts:
#	Tetrahedral_remeshing/examples/Tetrahedral_remeshing/CMakeLists.txt
 2020-12-09 15:35:47 +01:00
Laurent Rineau 37f85e7702 Merge pull request #5209 from janetournois/Mesh_3-debug_global_optimizers-jtournois 
Mesh_3 global optimizers - improve projection to surface
 2020-12-09 14:58:56 +01:00
Dmitry Anisimov 3127190bcf marc's review 2020-12-08 12:48:04 +01:00
Jane Tournois 2d73ef361e remove wrong assertions 
when v has dimension 3, its incident cells can be either all inside
or all outside the complex
 2020-12-04 17:18:04 +01:00
Jane Tournois 232cf10af8 remove unused code 2020-12-04 10:40:42 +01:00
Mael Rouxel-Labbé 35fa50213a Avoid copies in Mesh_triangulation_3's trivial functions 
These exist because of P3M3
 2020-12-03 12:25:37 +01:00
Maxime Gimeno 0ed99d0182 Add a test for old Mesh_cell_base_3 2020-11-30 12:54:59 +01:00
Maxime Gimeno 5ee03985bf Fix atomic wrong function 2020-11-30 11:37:16 +01:00
Jane Tournois 0ed6aca5a4 replace get_closest_point() by get_closest_triangle() 
to use this function with Periodic_3_mesh_3
 2020-11-27 13:04:06 +01:00
Jane Tournois 9666b3cb73 replace PCA of points by PCA of triangles 
to make projection more precise and avoid moving a point inside a
protecting ball
 2020-11-26 16:25:55 +01:00
Maxime Gimeno 3b70343590 Merge remote-tracking branch 'cgal/master' into CGAL_IO-maxGimeno 2020-11-16 16:19:43 +01:00
Maxime Gimeno 1c00bf6847 Merge remote-tracking branch 'cgal/master' into Cmake_improvements-maxGimeno 2020-10-29 15:09:16 +01:00
Laurent Rineau 646db6ef74 Try to fix a warning on MSVC 
```
...\include\CGAL/Polyhedral_mesh_domain_with_features_3.h(264): warning C4267: 'argument': conversion from 'size_t' to '_Ty', possible loss of data
        with
        [
            _Ty=int
        ]
...\cmake\platforms\x64_Cygwin-Windows10_MSVC2017-Release-64bits\test\Mesh_3\test_meshing_polylines_only.cpp(80): note: see reference to function template instantiation 'void CGAL::Polyhedral_mesh_domain_with_features_3<K,CGAL::Polyhedron_3<Gt,CGAL::Mesh_3::Mesh_polyhedron_items<Patch_id>,CGAL::HalfedgeDS_default,std::allocator<_Ty>>,CGAL::Default,Patch_id,CGAL::Tag_true>::add_features<std::_Vector_iterator<std::_Vector_val<std::_Simple_types<std::vector<CGAL::Point_3<Kernel_>,std::allocator<CGAL::Point_3<Kernel_>>>>>>>(InputIterator,InputIterator)' being compiled
        with
        [
            Gt=K,
            Patch_id=int,
            _Ty=int,
            Kernel_=CGAL::Epick,
            InputIterator=std::_Vector_iterator<std::_Vector_val<std::_Simple_types<Polyline>>>
        ]
```
 2020-10-27 09:43:46 +01:00
Laurent Rineau 19fa64fdca Mesh_3: Fix Polyhedral_mesh_domain_with_features_3::add_features 
This patch, allows to mesh a polyhedron in a 3D demo, while
specifying a polylines item for the sharp features.
 2020-10-23 13:52:54 +02:00
Maxime Gimeno bebd60c12b Merge remote-tracking branch 'cgal/master' into Cmake_improvements-maxGimeno 2020-10-20 09:53:54 +02:00
Mael Rouxel-Labbé 444531b80e Fix broken `Kernel` links 2020-10-14 19:22:46 +02:00
Mael Rouxel-Labbé f55ef7dd50 Merge remote-tracking branch 'cgal/master' into CGAL_IO-maxGimeno 2020-10-09 18:36:17 +02:00
Sebastien Loriot c54622e9b4
Merge pull request #4976 from janetournois/Tet_remeshing-speedup-GF 
Tetrahedral Remeshing - speedup
 2020-10-02 15:29:24 +02:00
Sebastien Loriot 9e4970faef
Merge pull request #4781 from lrineau/Mesh_3-ITT_support-GF 
Add ITT support in Mesh_3
 2020-10-02 15:20:04 +02:00
Sebastien Loriot 20ac7ff2da
Merge pull request #4792 from lrineau/Mesh_3-reduce_size_of_debuginfo-GF 
Reduce size of symbols (and debug infos)
 2020-10-02 15:17:44 +02:00
Sebastien Loriot b92ad36e82
Merge pull request #4892 from lrineau/Mesh_3-new_TBB_task_group_API-GF 
Mesh_3: now uses tbb:task_group instead of tbb::task (deprecated)
 2020-10-02 15:16:08 +02:00
Jane Tournois 8063d3cf6f replace deprecated std::not1 by std::not_fn 
std::not1 is deprecated in C++17 and removed from C++20

commit 5b474e0075 is similar
 2020-09-25 15:00:49 +02:00
Mael Rouxel-Labbé 4694a48913 Merge remote-tracking branch 'cgal/master' into CGAL_IO-maxGimeno 2020-09-22 11:35:25 +02:00
Maxime Gimeno efc903d8dc Fix error 2020-09-10 10:22:09 +02:00
Maxime Gimeno aeda2ef58c Replace boolean name and prevent maxx_domain=0 2020-09-07 12:35:54 +02:00
Maxime Gimeno 98c80402bc Don't use cell info() 2020-09-04 12:27:32 +02:00
Maxime Gimeno 56af55ecd4 Fix bug in mesh_3 tests 2020-08-27 13:46:04 +02:00
Maxime Gimeno 39c0f96492 Fix domain 0 behaviour 2020-08-27 13:18:46 +02:00
Maxime Gimeno 9d1e849517 Allow the .mesh to be read even with null domains 2020-08-27 10:26:58 +02:00
Mael Rouxel-Labbé 8682f9bafb Merge remote-tracking branch 'cgal/master' into CGAL_IO-maxGimeno 2020-08-24 11:45:17 +02:00
Dmitry Anisimov 263ad6bc99 fixed ch3, inter3, otr2, psp, pmp, smsp, mesh3 + cleanup 2020-08-20 18:25:01 +02:00
Sébastien Loriot 93d62b969c add forward declaration 
File_medit.h is included by Mesh_complex_3_in_triangulation_3_base.h
 2020-08-18 14:09:06 +02:00
Jane Tournois 1e42f4c9d4 rename IO functions for MEDIT format and a Triangulation_3 2020-08-18 11:16:58 +02:00
Jane Tournois 0a7d8cfd25 add an example with IO for a .mesh file 2020-08-18 10:42:20 +02:00
Maxime Gimeno 9c15f2c9dc Use FeatureSummary in the demo, and remove CGAL_FOUND 2020-08-04 12:46:17 +02:00
Laurent Rineau d311fca3ec Remove the deprecated use of approximate_number_of_enqueued_element 2020-08-03 14:42:44 +02:00
Laurent Rineau 4fc2f5938d Mesh_3 now uses tbb:task_group instead of tbb::task (deprecated) 2020-07-31 16:17:56 +02:00
Laurent Rineau dd383217f2 Avoid a race-condition between two tests using the same I/O file 2020-07-29 16:42:10 +02:00
Laurent Rineau 40a0a1bf49 Allow the use of Default as concurrency tag in Mesh_triangulation_3 
That is used in Tetrahedral_remeshing.
 2020-07-29 16:41:37 +02:00
Laurent Rineau 9a0f310e6b Fix IO of Mesh_vertex_3: case of dimension -1 
I forgot that dimension() can be -1, for far points. It has to be
dealt with in I/O.
 2020-07-29 16:40:48 +02:00
Laurent Rineau e293161a43 Merge pull request #4870 from lrineau/Mesh_3-fix_warning-GF 
Mesh_3: fix a warning
 2020-07-23 17:15:00 +02:00
Laurent Rineau 25eeff801b Fix a warning 
```
.../CGAL/Mesh_3/C3T3_helpers.h:1249:14: warning: ‘*((void*)& surface +4)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1249 |       return surface;
      |              ^~~~~~~
```
 2020-07-22 12:29:55 +02:00
Laurent Rineau 251074ad54 Use an API compatible with boost::optional and std::optional 2020-07-22 12:29:39 +02:00
Mael Rouxel-Labbé 3e9ce127b2 Misc CGAL IO doc fixes 2020-07-17 16:51:25 +02:00
Mael Rouxel-Labbé 93f1cd99ca Merge remote-tracking branch 'cgal/master' into CGAL-Improve_NP_doc_presentation-GF 2020-07-16 09:53:31 +02:00
Mael Rouxel-Labbé b6790c6bc6 Require only ostream instead of ofstream 2020-07-13 16:56:10 +02:00
Laurent Rineau 95687acb0f Merge branch 'Mesh_3-fix_examples_CMakeLists_with_TBB-GF' into Mesh_3-fix_examples_CMakeLists_with_TBB-GF--for_master 2020-07-09 13:58:41 +02:00
Laurent Rineau 9bf27c6763 Fix the link with TBB 2020-07-09 13:24:08 +02:00
Laurent Rineau ae40fec6a3 Missing target 2020-07-09 13:23:55 +02:00
Laurent Rineau 49f2d04d68 Sort target names 2020-07-09 13:22:37 +02:00
Laurent Rineau 72d280fdd9 Merge pull request #4803 from janetournois/Tet_remeshing-from_c3t3_input-jtournois 
Tetrahedral remeshing from C3T3
 2020-07-08 16:24:42 +02:00
Laurent Rineau 2e912d4cb2 Merge branch 'master' into Mesh_3-ITT_support-GF 2020-07-08 16:22:58 +02:00
Laurent Rineau 72b0f36790 Remove the task "Mesher_3::refine_mesh" (useless) 2020-07-08 15:47:56 +02:00
Laurent Rineau bc4fffebc0 ITT for CGAL_MESH_3_VERBOSE as well 2020-07-08 15:47:38 +02:00
Jane Tournois 612d6772b9 operator* between enum and floating type is deprecated, fix warning 2020-07-07 11:13:16 +02:00
Jane Tournois 5b474e0075 replace deprecated std::not1 by std::not_fn 
std::not1 is deprecated in C++17 and removed from C++20

+ add a C++17 macro in config.h
 2020-07-07 10:49:58 +02:00
Laurent Rineau 4d1d4e51eb Merge pull request #4809 from lrineau/Mesh_3-move_semantic_for_c3t3-GF 
Add move-semantic for c3t3, and a test
 2020-07-03 16:21:27 +02:00
Jane Tournois 2a4b4a2a10 set the Surface_patch_index also in the infinite cell 
otherwise facet and its mirror don't have the same patch index
 2020-07-03 07:35:20 +02:00
Laurent Rineau 36fd23d27c Fix the move-constructor: `far_vertices_` was forgot 2020-07-02 16:50:38 +02:00
Jane Tournois 460b1f29a6 Merge branch 'master' into Tet_remeshing-from_c3t3_input-jtournois 
# Conflicts:
#	Tetrahedral_remeshing/include/CGAL/Tetrahedral_remeshing/internal/tetrahedral_adaptive_remeshing_impl.h
 2020-07-01 08:01:05 +02:00
Laurent Rineau 07eacf5231 Merge pull request #4795 from janetournois/Mesh_3-fix_optimisers_parallel-jtournois 
Mesh_3 - fix parallel optimisers
 2020-06-30 16:38:05 +02:00
Jane Tournois 40668a297e fix protection of parallel code 2020-06-29 07:07:13 +02:00
Mael Rouxel-Labbé ae4c2aaa9e IO doc fixes 2020-06-26 16:08:02 +02:00
Jane Tournois 7740686d78 remove trailing whitespace 2020-06-26 15:54:17 +02:00
Jane Tournois 2a3dba9156 make build_triangulation() more generic with Surface_patch_index instead of int 
this is necessary to be able to remesh a C3t3 with a Surface_patch_index that
is not convertible to `int`
It is the case with meshes generated from images, which often use
std::pair<Subdomain_index, Subdomain_index>
 2020-06-26 15:53:02 +02:00
Jane Tournois 615ac14086 protect incident_cells_threadsafe with macro 
Periodic_3_mesh_3 does not have an implementation of these functions
because it does not have a parallel implementation
 2020-06-26 15:51:15 +02:00
Mael Rouxel-Labbé 50e3a838f3 Compilation fixes 2020-06-25 18:20:52 +02:00
Laurent Rineau 3895932005 Fix the TDS: restore the concurrency tag 2020-06-25 16:56:37 +02:00
Mael Rouxel-Labbé 26355e2e32 Uniformize capital / third person usage of \brief 2020-06-25 15:13:47 +02:00
Laurent Rineau 5572d9dba8 Add move-semantic for c3t3, and a test 2020-06-24 10:59:19 +02:00
Mael Rouxel-Labbé 26ae0d2b8c Misc compilation fixes 2020-06-23 19:11:55 +02:00
Laurent Rineau 92ca24d013 Merge pull request #4783 from maxGimeno/CGAL-Fixes_after_beta1-maxGimeno 
Some Fixes after beta1
 2020-06-23 18:50:00 +02:00
Laurent Rineau bd7d3c498f Merge pull request #4786 from lrineau/Mesh_3-fix_compilation_error_MSVC2015-GF 
Continue workaround for MSVC2015
 2020-06-23 18:49:58 +02:00
Maxime Gimeno f221f4ba4a Try to add CGAL::CGAL_Image_IO to the linked target to fix LINK error on MSVC 2019 2020-06-19 15:53:50 +02:00
Jane Tournois d4b7af22ba use tr_.try_lock_and_get_incident_cells() 
and remove a "todo" of CJ
 2020-06-19 13:31:52 +02:00
Jane Tournois 7cd18cd659 unlock after the move, even if there is no topological change 
to avoid making changes with another thread
 2020-06-19 13:31:50 +02:00
Jane Tournois c6a922c9dc fix Facet_updater parallel 
`vertex_to_proj` was not locked and this was causing seg faults
 2020-06-19 13:31:49 +02:00
Mael Rouxel-Labbé 6f8a895671 Merge remote-tracking branch 'mine/CGAL-Improve_NP_doc_presentation-GF' into CGAL_IO-maxGimeno 2020-06-18 15:21:27 +02:00
Mael Rouxel-Labbé 26eb7903aa Merge remote-tracking branch 'cgal/master' into CGAL-Improve_NP_doc_presentation-GF 2020-06-18 12:46:46 +02:00
Maxime Gimeno ea53a8d70d Merge remote-tracking branch 'cgal/master' into CGAL_IO-maxGimeno 2020-06-17 14:25:21 +02:00
Laurent Rineau e44d58a49c Fix a bug in this PR 
The number of type in `Indices_tuple` and `Index` may differ: one is a
list of types, and the other one is more like a set of types.
 2020-06-17 10:22:51 +02:00
Laurent Rineau 86496e469e Repair the I/O of Mesh_vertex_3 2020-06-16 21:56:07 +02:00
Laurent Rineau b64a1718c4 Reduce size of symbols (and debug infos) 
- one nested struct `Tds` in `Mesh_triangulation_3`,
- rework of `Mesh_vertex_base_3` and `Compact_mesh_cell_base_3`.

That reduction of debug infos and size of symbols will help the IDE
and debuggers.

```
Debug info size (with gcc-9, and `-g`)

ORIG	AFTER	RATIO  		FILE IN examples/Mesh_3/
56532	55572	1.01727		mesh_3D_image_with_custom_initialization.debug
64696	63420	1.02012		mesh_cubes_intersection_with_features.debug
56700	55536	1.02096		mesh_3D_image.debug
56488	55324	1.02104		mesh_implicit_sphere.debug
56496	55332	1.02104		mesh_implicit_sphere_variable_size.debug
56776	55604	1.02108		mesh_3D_image_variable_size.debug
56520	55296	1.02214		mesh_cubes_intersection.debug
56684	55428	1.02266		mesh_3D_gray_image.debug
56796	55536	1.02269		mesh_3D_gray_image_multiple_values.debug
56732	55472	1.02271		mesh_3D_gray_vtk_image.debug
57128	55824	1.02336		mesh_optimization_example.debug
57420	56088	1.02375		mesh_optimization_lloyd_example.debug
56948	55560	1.02498		mesh_implicit_domains_2.debug
56932	55544	1.02499		mesh_implicit_domains.debug
69160	63304	1.09251		mesh_hybrid_mesh_domain.debug
72212	66088	1.09266		mesh_3D_image_with_features.debug
70172	63924	1.09774		mesh_two_implicit_spheres_with_balls.debug
75388	66128	1.14003		mesh_polyhedral_domain_sm.debug
75676	64412	1.17487		mesh_polyhedral_complex_sm.debug
81544	67772	1.20321		mesh_polyhedral_domain.debug
87456	71672	1.22023		mesh_polyhedral_domain_with_features_sm.debug
87524	71600	1.2224		remesh_polyhedral_surface_sm.debug
92332	74528	1.23889		mesh_polyhedral_complex.debug
98640	77448	1.27363		mesh_polyhedral_domain_with_lipschitz_sizing.debug
95640	74456	1.28452		mesh_polyhedral_domain_with_features.debug
95132	74000	1.28557		mesh_polyhedral_domain_with_surface_inside.debug
95724	74388	1.28682		remesh_polyhedral_surface.debug

1899448	1695256	1.12045		total
```
 2020-06-16 17:47:00 +02:00
Laurent Rineau 113c3d1d6f Continue woraround for MSVC2015 
That is a followup to commit 5fbaaa9e42
from PR #4468.

I also chose a better name `is_null` instead of
`compare_weighted_circumcenter`.
 2020-06-15 15:56:28 +02:00
Maxime Gimeno 49e66c4ddf Add missing target 2020-06-15 13:08:28 +02:00
Laurent Rineau d263a63925 Refresh examples/Mesh_3/CMakeLists.txt 
... and remove the use of the variable `WITH_CGAL_ImageIO`.
 2020-06-12 20:43:42 +02:00
Laurent Rineau 25710329ac Add ITT support in Mesh_3 2020-06-11 14:56:04 +02:00
Laurent Rineau 9b8ecd720b Merge pull request #4636 from sgiraudot/CMake-Third_party_imported_targets-GF 
CMake: Use Imported Targets for 3rd Party Libs
 2020-06-05 17:54:14 +02:00
Mael Rouxel-Labbé 071565467d Merge remote-tracking branch 'cgal/master' into CGAL-Improve_NP_doc_presentation-GF 2020-06-03 19:01:46 +02:00
Laurent Rineau 871c97273a Merge pull request #4496 from lrineau/CGAL-move_semantic_for_triangulations-GF 
Add move-semantic to Compact_container and Triangulations
 2020-06-03 16:23:22 +02:00
Laurent Rineau a828cb0d06 Merge pull request #4620 from janetournois/Tetrahedral_remeshing-new-jtournois 
Tetrahedral remeshing - new package
 2020-06-03 16:23:17 +02:00
Simon Giraudot 89285f1feb Merge remote-tracking branch 'mine/CMake-Third_party_imported_targets-GF' into CMake-Third_party_imported_targets-GF 2020-05-28 08:53:17 +02:00
Sébastien Loriot 4dda7b6c80 update license of c3t3 related files 
a proper package must be created in a later release
 2020-05-27 15:53:05 +02:00
Mael Rouxel-Labbé 580a1efd5c Remove trailing whitespace / tabs 2020-05-22 15:31:50 +02:00
Mael Rouxel-Labbé fb8463f470 Merge remote-tracking branch 'cgal/master' into CGAL_IO-maxGimeno 2020-05-22 15:17:56 +02:00
Laurent Rineau dcc4fb1cc1 Merge remote-tracking branch 'cgal/master' into CGAL-move_semantic_for_triangulations-GF 
# Conflicts:
#	STL_Extension/include/CGAL/Compact_container.h
 2020-05-20 09:46:26 +02:00
Sébastien Loriot 7c4586be1b Merge remote-tracking branch 'cgal/releases/CGAL-5.0-branch' 2020-05-12 16:59:02 +02:00
Sébastien Loriot fb83386f44 Merge remote-tracking branch 'cgal/releases/CGAL-4.14-branch' 2020-05-12 16:58:32 +02:00
Mael Rouxel-Labbé 038869cab9 Merge remote-tracking branch 'cgal/master' into CGAL-Improve_NP_doc_presentation-GF 2020-05-12 15:12:21 +02:00
Jane Tournois 94d98ed0dc c3t3 cell info in the .mesh file is subdomain_index() 
the recent internal changes in build_triangulation() use subdomain_index(),
which is part of the concept MeshCellBase_3
 2020-05-11 06:48:25 +02:00
Jane Tournois 9d194e3814 add missing includes 2020-05-06 15:18:57 +02:00
Jane Tournois 28a9cb150a replace std::set<Vertex_handle> with std::array<Vertex_handle> 
for facets vertices
this should be a lot more efficient
 2020-05-06 15:11:06 +02:00
Laurent Rineau 3951c38637 Fix UBSAN error: do not bind reference to null pointer 
Equivalent to #4683
 2020-05-04 18:54:19 +02:00
Jane Tournois 8ec09f40fc remove dependency on Skin_surface_3 
by replacing Triangulation_incremental_builder_3 by
build_triangulation() from tet_soup_to_c3t3.h
(which is part of Mesh_3 as C3T3)
 2020-05-04 16:09:27 +02:00
Maxime Gimeno 049439fa6b Merge remote-tracking branch 'cgal/master' into CGAL_IO-maxGimeno 2020-04-30 16:47:58 +02:00
Jane Tournois 977185466a fix .mesh reader 
- fix order of vertices depending on parity of i
- add infinite facets to incident cells map before assigning neighbors
 2020-04-22 09:34:46 +02:00
Laurent Rineau fe1f731e22 Fix timestamps 2020-04-21 17:08:57 +02:00
Maxime Gimeno 5b2d46cfa0 Fixes for min/max 2020-04-21 12:04:45 +02:00
Maxime Gimeno 50766d9d03 Fixes for min/max 2020-04-21 11:52:56 +02:00
Maxime Gimeno e9d41d7b7d Fixes for min/max 2020-04-21 11:38:37 +02:00
Simon Giraudot 1dd6a665a1 Merge remote-tracking branch 'mine/CMake-Third_party_imported_targets-GF' into CMake-Third_party_imported_targets-GF 2020-04-20 09:09:32 +02:00
Jane Tournois cf58a08a55 Merge branch 'master' into Tetrahedral_remeshing-new-jtournois 2020-04-20 06:24:36 +02:00
Sébastien Loriot 3b52dfd7de Merge remote-tracking branch 'cgal/master' 2020-04-18 14:47:28 +02:00
Jane Tournois e985f03817 initialize time stamp with -1 in Mesh_vertex_base_3 
the time stamper checks whether it is -1 or not,
with -1 as default value.
It was not initialized so the behaviour was not as expected.

Similar to what is done in 0e9389b9fe0ad90aaa30ba5d634824d59c7f804d
for Mesh_cell_base_3
 2020-04-17 14:05:37 +02:00
Sebastien Loriot 98fafe4ef1
Merge pull request #4514 from MaelRL/CGAL-Fix_warnings-GF 
Fix (some) testuite warnings
 2020-04-16 18:15:11 +02:00
Jane Tournois 395621a5fa initialize time stamp with -1 in Mesh_cell_base 
the time stamper checks whether it is -1 or not,
with -1 as default value.
It was not initialized so the behaviour was not as expected.
 2020-04-16 16:40:50 +02:00
Simon Giraudot 421096fd7f Use imported targets everywhere 2020-04-15 14:06:13 +02:00
Sébastien Loriot acd6d9d8de removing tabs and trailing whitespaces 2020-04-10 11:26:31 +02:00
Mael Rouxel-Labbé fc79510388 Regroup NP aliases into the base doxyfile.in 2020-04-04 17:26:32 +02:00
Jane Tournois dca97faad6 Merge remote-tracking branch 'cgal/master' into Tetrahedral_remeshing-new-jtournois 2020-04-01 12:25:59 +01:00
Jane Tournois e0171c2f24 Merge branch 'master' into Tetrahedral_remeshing-new-jtournois 2020-04-01 07:07:46 +01:00
Maxime Gimeno 4e6fb685c6 Merge remote-tracking branch 'mine/CGAL_IO-maxGimeno' into HEAD 2020-03-27 11:11:10 +01:00
Maxime Gimeno 9c0648a004 Merge tag 'master_before_no_tws_nor_tabs' into CGAL_IO-maxGimeno 2020-03-27 11:05:43 +01:00
Sébastien Loriot 38789af55d Update branch from master after trailing whitespaces and tabs removal 2020-03-26 19:25:47 +01:00
Sébastien Loriot d1a323c730 extra run of the script to remove tabs and trailing whitespaces 2020-03-26 19:24:14 +01:00
Sébastien Loriot 86e25f7e71 Update branch from master after trailing whitespaces and tabs removal 2020-03-26 19:23:54 +01:00
Sébastien Loriot 58b10a3605 extra run of the script to remove tabs and trailing whitespaces 2020-03-26 18:58:50 +01:00
Sébastien Loriot c1a42c7d37 Update branch from master after trailing whitespaces and tabs removal 2020-03-26 18:58:21 +01:00
Sébastien Loriot 8bb22d5b2c extra run of the script to remove tabs and trailing whitespaces 
right after the merge of the 5.0 release branch

+ manual fix of the files (indentation was changed in the meantime):
   * Spatial_sorting/include/CGAL/Multiscale_sort.h
   * Spatial_sorting/test/Spatial_sorting/test_multiscale.cpp
 2020-03-26 14:26:59 +01:00
Sébastien Loriot 8b153fb495 Merge branch 'cgal/releases/CGAL-5.0-branch' 
whitespace+tab removal, merged with option -Xignore-space-change
 2020-03-26 14:22:32 +01:00
Sébastien Loriot 0779373835 extra run of the script to remove tabs and trailing whitespaces 
right after the  merge of 4.14 release branch

+ manual fix on one line in:
    * Arrangement_on_surface_2/include/CGAL/IO/Arr_text_formatter.h
    * .travis/generate_travis.sh
 2020-03-26 14:16:06 +01:00
Sébastien Loriot 0a46621dc6 Merge branch 'cgal/releases/CGAL-4.14-branch' 
whitespace+tab removal, merged with option -Xignore-all-space
 2020-03-26 13:28:46 +01:00
Sébastien Loriot 590612a563 run the script to remove tabs and trailing whitespaces 2020-03-26 13:25:16 +01:00
Laurent Rineau e6a42bb597 Fix again a compilation error on Windows 
It was:
```
..\include\CGAL/Mesh_3/Protect_edges_sizing_field.h(1265): error C2121: '#': invalid character: possibly the result of a macro expansion
..\include\CGAL/Mesh_3/Protect_edges_sizing_field.h(1257): error C2760: syntax error: unexpected token 'identifier', expected '('
```
 2020-03-24 21:20:44 +01:00
Laurent Rineau 6d215c776b Fix compilation error on Windows 2020-03-19 13:28:23 +01:00
Sebastien Loriot 1454b9903c
Merge pull request #4209 from maxGimeno/PMP-Default_pmap-maxGimeno 
PMP: Default Property_maps for Index_maps
 2020-03-17 18:27:55 +01:00
Sébastien Loriot cc1bd20c7c Merge pull request #4356 from sgiraudot/Documentation-Update_cmake_variables-GF 
Third party libs: improve documentation + introduce new CMake functions
 2020-03-17 18:19:40 +01:00
Mael Rouxel-Labbé c33e8b60d7 Merge remote-tracking branch 'maxgimeno/PMP-Default_pmap-maxGimeno' into CGAL_IO-maxGimeno 2020-03-17 09:33:19 +01:00
Mael Rouxel-Labbé 30d4754a04 Merge remote-tracking branch 'cgal/master' into CGAL_IO-maxGimeno 2020-03-17 09:03:12 +01:00
Sébastien Loriot 32813dc976 Merge remote-tracking branch 'cgal/releases/CGAL-5.0-branch' 2020-03-16 16:32:47 +01:00
Sébastien Loriot cf99ea072d Merge remote-tracking branch 'cgal/releases/CGAL-4.14-branch' 2020-03-16 16:19:38 +01:00
Laurent Rineau 789d3314b6
Merge branch 'master' into Polyhedron-demo__add_qtscript_support_to_Mesh_3_plugin-GF 2020-03-13 17:14:13 +01:00
Laurent Rineau 378554e5a7 Change the API of `for_compact_container`/`Compact_container_traits` 
Now, we have a proper pair of getter/setter, and the `void` pointer is
get by a `reinterpret_cast`, instead of a union.

Cc: @mglisse
 2020-03-09 17:19:58 +01:00
Mael Rouxel-Labbé 0a2b590110 Use the BGL automatic index map initializer 2020-03-05 15:31:40 +01:00
Laurent Rineau 661924f9bf Labeled_mesh_domain_3: Fix the `value_outside` parameter 2020-03-02 17:15:16 +01:00
Mael Rouxel-Labbé bd8371a295 Remove useless precondition (check that std::size_t >= 0) 2020-02-11 08:57:36 +01:00
Simon Giraudot 66ebb5a7d6 Fix missing Eigen dep in targets 2020-02-10 11:57:57 +01:00
Simon Giraudot 6c8fd43ebb Use CGAL_target_use_* mechanism for Eigen, LASLIB, OpenCV, TensorFlow, GLPK, SCIP, Boost IOStreams and Serialization 2020-02-10 11:57:56 +01:00
Mael 8f29c7cb63
Merge branch 'master' into CGAL-Parallel_if_available_tag 2020-01-29 16:42:54 +01:00
Laurent Rineau 5fc7b97e32 Merge pull request #4468 from maxGimeno/TBB-Fix_deprecation_warnings-5_0-maxGimeno 
TBB deprecated code replacement
 2020-01-29 16:34:56 +01:00
Laurent Rineau 85e2c79dce Merge pull request #4494 from lrineau/Mesh_3-binary_IO_CRLF_issue-GF 
Mesh_3 binary I/O: allow to read a binary file with a CRLF EOL at the end of first line
 2020-01-29 16:29:44 +01:00
Laurent Rineau 315a0b54d1 Merge pull request #4468 from maxGimeno/TBB-Fix_deprecation_warnings-5_0-maxGimeno 
TBB deprecated code replacement
 2020-01-29 16:27:53 +01:00
Laurent Rineau 06b1572e4d Merge pull request #4494 from lrineau/Mesh_3-binary_IO_CRLF_issue-GF 
Mesh_3 binary I/O: allow to read a binary file with a CRLF EOL at the end of first line
 2020-01-29 16:27:41 +01:00
Mael Rouxel-Labbé 41271b67f6 Improvements to CGAL i/o across the board 2020-01-29 10:00:07 +01:00
Jane Tournois d32d65f9da Merge remote-tracking branch 'lrineau/Mesh_3-binary_IO_CRLF_issue-GF' into Tetrahedral_remeshing-new-jtournois 2020-01-28 15:51:30 +00:00
Jane Tournois 3940dd69eb Revert "replace Point type to make it valid for non-weighted triangulations" 
This reverts commit 74b12712faae74bf25fdec749049ecb13c517529.
 2020-01-28 15:50:50 +00:00
Jane Tournois da5febfac7 replace Point type to make it valid for non-weighted triangulations 2020-01-28 15:50:50 +00:00
Laurent Rineau 4e102d9784 Allow to read a binary file with a CRLF EOL at the end of first line 2020-01-28 15:35:27 +01:00
Maxime Gimeno e3c1de5f03 fix helpers 2020-01-28 10:36:19 +01:00
Maxime Gimeno 05735be4e3 Overload atomic<T*> instead of atomic<T> 2020-01-27 16:02:24 +01:00
Maxime Gimeno 5fbaaa9e42 Workaround for VS 2015 2020-01-27 10:25:24 +01:00
Laurent Rineau c8fe41922d Add a debug display with CGAL_MESH_3_PROTECTION_DEBUG & 1 2020-01-20 18:19:52 +01:00
Laurent Rineau 4532ae48b7 Improve the code that deals with CGAL_MESH_3_DEBUG_FACET_CRITERIA 2020-01-20 18:18:45 +01:00
Laurent Rineau a4991fd6da More dump of the c3t3 in case of crash 2020-01-20 18:18:45 +01:00
Mael Rouxel-Labbé d620198049 Merge branch 'CGAL_IO-maxGimeno-old' into CGAL_IO-maxGimeno 2020-01-17 12:34:08 +01:00
Laurent Rineau 455f8c6351 Merge pull request #4463 from lrineau/Polyhedron_demo-fix_mesh_3_plugin-GF 
Bug in the demo (mesh_3_plugin)
 2020-01-15 17:31:44 +01:00
Laurent Rineau eff864a2a9 Merge pull request #4463 from lrineau/Polyhedron_demo-fix_mesh_3_plugin-GF 
Bug in the demo (mesh_3_plugin)
 2020-01-15 17:19:13 +01:00
Maxime Gimeno 85712ba28c WIP replacing tbb deprecated includes. 2020-01-14 15:03:20 +01:00
Laurent Rineau 597a4f1283 Bug in the demo (mesh_3_plugin) 2020-01-10 15:20:56 +01:00
Laurent Rineau 0b0154cac2 Bug in the demo 2020-01-09 16:52:40 +01:00
Laurent Rineau daf2e6839f Improve the code that deals with CGAL_MESH_3_PROTECTION_DEBUG 2020-01-09 16:52:05 +01:00
Laurent Rineau a8cb280133 Fix a compilation error with CGAL_MESH_3_PROTECTION_DEBUG 2020-01-08 15:52:12 +01:00
Laurent Rineau 9de3913dbf Fix warnings 2020-01-08 15:49:16 +01:00
Sebastien Loriot 2c4c4d357a
Merge pull request #4422 from lrineau/Mesh_3-cleanup_detect_polylines-GF 
Cleanup: remove unused files from Mesh_3
 2019-12-20 09:15:14 +01:00
Laurent Rineau 674627937c Merge pull request #4389 from lrineau/DT_3-issue4388-GF 
Fix  DT3 parallel performance loss (issue #4388)
 2019-12-17 09:16:52 +01:00
Laurent Rineau b826770302 Merge pull request #4397 from afabri/T3_accelerate_insert_in_hole 
Triangulation_3: Accelerate point insertion
 2019-12-17 09:16:35 +01:00
Laurent Rineau de1074426b Merge pull request #4389 from lrineau/DT_3-issue4388-GF 
Fix  DT3 parallel performance loss (issue #4388)
 2019-12-17 09:15:48 +01:00
Laurent Rineau 1224939bcb Cleanup: remove unused files 
That is a follow-up to the PR https://github.com/CGAL/cgal/pull/2336.
 2019-12-16 10:49:35 +01:00
Laurent Rineau 048691b454 Fix test_c3t3_io.cpp after the change in cells order 
As this branch modified `insert_in_hole`, then the order of cells in
the cells container is modified.
 2019-12-10 14:26:12 +01:00
Laurent Rineau 0fa0c4fbb9 Merge pull request #4244 from maxGimeno/AABB_tree-Make_accelerate_distance_queries_default-maxGimeno 
AABB_tree: make accelerate distance queries default
 2019-12-05 11:05:35 +01:00
Laurent Rineau 3b5d13f023 Merge pull request #4250 from maxGimeno/PMP-Side_of_tm-use_bbox-maxGimeno 
PMP: Make Side_of_triangle_mesh faster for disjoint meshes
 2019-12-05 11:05:29 +01:00
Laurent Rineau 6cdd833e13 Merge branch 'DT_3-issue4388__for_CGAL-4.14.2-GF' into DT_3-issue4388-GF 2019-12-04 15:39:55 +01:00
Laurent Rineau 6ded244449 Merge branch 'DT_3-issue4388__for_CGAL-4.13.2-GF' into DT_3-issue4388__for_CGAL-4.14.2-GF 2019-12-04 15:32:07 +01:00
Laurent Rineau 3ade506eba Create approximate_size() in Concurrent_compact_container 
Instead of having an atomic integer for the size of the compact
container, now all free lists have an atomic integer for their size,
but it is only updated when the size is increased by 10%.
 2019-12-04 15:20:52 +01:00
Mael Rouxel-Labbé 6f0bbc90df Enable parallel for three tests in Mesh_3/test that relied on CONCURRENT_MESH_3 
The macro was never defined and if it had been, the targets would not have
been linked properly anyway.
 2019-11-20 12:46:42 +01:00
Mael Rouxel-Labbé 9b598c4ee6 Remove mentions of targets that do not exist in CmakeLists of Mesh_3/test 2019-11-20 12:36:42 +01:00
Mael Rouxel-Labbé e73b973b62 Use Parallel_if_available_tag to simplify code that used CGAL_LINKED_WITH_TBB 2019-11-20 12:24:54 +01:00
Mael Rouxel-Labbé 53d4c9b580 Simplify 'Hash_handles_with_or_without_timestamps' (use 'Get_time_stamper') 2019-10-28 11:29:08 +01:00
Sébastien Loriot 52164b1fba First pass on removing license notice in header for LGPL files 2019-10-19 15:40:30 +02:00
Sébastien Loriot 254d60f642 First pass on removing license notice in header for GPL files 2019-10-19 15:23:19 +02:00
Sébastien Loriot 7356421d80 introduce Commercial license SPDX tag 2019-10-19 12:15:19 +02:00
Sébastien Loriot 9bd9c68b83 update LGPL[23]+ and GPL[23]+ SPDX tags 
ack -l --no-svg "SPDX-License-Identifier: GPL-3.0\+" | xargs sed -i "s/SPDX-License-Identifier: GPL-3.0+/SPDX-License-Identifier: GPL-3.0-or-later/"
ack -l --no-svg "SPDX-License-Identifier: LGPL-3.0\+" | xargs sed -i "s/SPDX-License-Identifier: LGPL-3.0+/SPDX-License-Identifier: LGPL-3.0-or-later/"
ack -l --no-svg "SPDX-License-Identifier: GPL-2.0\+" | xargs sed -i "s/SPDX-License-Identifier: GPL-2.0+/SPDX-License-Identifier: GPL-2.0-or-later/"
ack -l --no-svg "SPDX-License-Identifier: LGPL-2.0\+" | xargs sed -i "s/SPDX-License-Identifier: LGPL-2.0+/SPDX-License-Identifier: LGPL-2.0-or-later/"
 2019-10-18 21:57:54 +02:00
Sébastien Loriot 7a233375b2 add missing const 
if non-const was provided, the same map should have been
provided to the tree
 2019-10-11 08:07:21 +02:00
Maxime Gimeno a52592909f Remove all calls to accelerate_distance_queries(), now redundant. 2019-09-24 11:44:20 +02:00
Maxime Gimeno c8c46d6f00 Finished the `Supported file formats` page 2019-09-19 13:27:06 +02:00
Maxime Gimeno 41d5f6fab0 WIP Supported file formats 2019-09-18 16:06:28 +02:00
Maxime Gimeno e5a0ddb7ba Add skeleton for some formats and list DS with documented IO in IOStream.txt 2019-09-18 14:45:38 +02:00
Laurent Rineau 2a5b7cd7ba Merge pull request #4111 from lrineau/CGAL-fix_ctest_on_Windows-GF 
Fix CTest on windows
 2019-09-05 14:59:38 +02:00
Laurent Rineau dc93527270 Merge pull request #4111 from lrineau/CGAL-fix_ctest_on_Windows-GF 
Fix CTest on windows
 2019-09-05 14:56:25 +02:00
Laurent Rineau 94d654b9ab Fill CGAL_EXECUTABLE_TARGETS wherever that was missing 2019-09-04 14:19:54 +02:00
Sébastien Loriot aa339ce63d Merge 'cgal/releases/CGAL-4.14-branch' 2019-08-29 07:37:03 +02:00
Laurent Rineau 4ab183acd9 Fix the miscompilation when TBB is not used 
fixup! Fix the miscompilation when TBB is not used
 2019-08-19 16:18:50 +02:00
Laurent Rineau 89b4c986d3 Allow Mesh_3 to cope with a 2D initial triangulation 2019-08-16 14:47:42 +02:00
Sébastien Loriot 02b7301db9 Merge 'releases/CGAL-4.14-branch' 2019-08-08 10:23:49 +02:00
Sébastien Loriot c5cdafbaba Merge 'cgal/releases/CGAL-4.13-branch' 2019-08-08 10:22:32 +02:00
Laurent Rineau 40c25757d4 Improve CGAL_MESH_3_DEBUG_POLYLINES_TO_PROTECT 2019-08-01 17:25:10 +02:00
Laurent Rineau 52de8ed5ec Fix a bug introduced in #2739 2019-08-01 17:24:47 +02:00
Laurent Rineau a0ea4f0c5f Merge branch 'releases/CGAL-4.14-branch' 2019-07-31 17:01:03 +02:00