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Author SHA1 Message Date
Clement Jamin a664003024 Doc fix 2013-07-12 15:08:29 +02:00
Clement Jamin 1eae99f042 Doc: escaped double quotes + use unspecified_type instead of Hidden_type 2013-07-12 15:01:41 +02:00
Clement Jamin f5e6d4e00d More replacement in the doc of \R by \mathbb{R} 
(cherry picked from commit 2ddd815832)
 2013-07-10 19:41:39 +02:00
Clement Jamin 2ddd815832 More replacement in the doc of \R by \mathbb{R} 2013-07-10 19:40:29 +02:00
Sébastien Loriot 33f0193644 replace in the doc \R by \mathbb{R} 
\R is not a valid latex command
I used: sed -i 's/\\f$\s*\\R/\\f$ \\mathbb{R}/g'

(cherry picked from commit d4d9bc212b)
 2013-07-10 17:22:29 +02:00
Sébastien Loriot d4d9bc212b replace in the doc \R by \mathbb{R} 
\R is not a valid latex command
I used: sed -i 's/\\f$\s*\\R/\\f$ \\mathbb{R}/g'
 2013-07-10 17:07:43 +02:00
Clement Jamin 09d75308fb Untabify 2013-07-02 18:16:22 +02:00
Clement Jamin 206b20bc15 Merge branch 'Mesh_3-parallel-cjamin-old' into Mesh_3-parallel-cjamin 2013-07-02 17:37:50 +02:00
Clement Jamin b0e1f0ead1 Benchmark "Delaunay with Fast_location" for sequential benchmark only 2013-07-02 13:48:22 +02:00
Clement Jamin 159ca5fab8 Remove the "TBB malloc proxy" recommendation, since we don't use it anymore 2013-07-02 13:32:15 +02:00
Clement Jamin fcdf906f06 Option to add temporary points on a far sphere before insertion 
Helps to reduce contention on the infinite vertex
But removing those points in the end takes time
so it's only worth it when points lie on a surface.
 2013-07-02 12:57:26 +02:00
Clement Jamin 8181587ed7 Fix tabs + better profiling 2013-07-02 11:37:32 +02:00
Jane Tournois 56d733b254 Merge remote-tracking branch 'origin/Mesh_3-improvements-GF' 
Several improvements of Mesh_3, including
- speedup of optimizers,
- make inexact_locate public in Triangulation_2 and Triangulation_3,
- compactify mesh_cell_base and mesh_vertex_base,
- fix of documentation,
- and more

Small feature :
https://cgal.geometryfactory.com/CGAL/Members/wiki/Features/Small_Features/Various_improvements_of_Mesh_3

Approved by the release manager.
 2013-07-01 16:25:56 +02:00
Clement Jamin 04c1a83977 Minor alignment change 2013-06-28 15:18:13 +02:00
Clement Jamin 079c39eef4 Update CMakeLists according to changes in FindTBB 2013-06-28 15:16:49 +02:00
Clement Jamin 2dc6c405b8 Drop the use of the TBB malloc proxy, use TBB allocators manually instead 
The TBB's "malloc proxy", which allows to replace all calls to the standard
allocators by calls to the TBB scalable allocator, is not available on MacOS.
Instead, we use the TBB allocators manually, where relevant.
 2013-06-27 15:29:47 +02:00
Laurent Rineau 0033b19157 Fix a precondition (bad copy paste from `vertex_triple_index()`) 2013-06-25 17:05:47 +02:00
Jane Tournois dcf22e09bb improve documentation for inexact_locate (because 'inexact_locate' does not come after 'locate' in the output of long descriptions of functions) 2013-06-24 13:28:44 +02:00
Jane Tournois 404f2e0e3c merge 2013-06-21 10:01:19 +01:00
Sébastien Loriot 716f87d2d7 rename Hidden_type to unspecified_type and update its description 2013-06-13 18:48:58 +02:00
Clement Jamin d0ca823aa8 Doc minor change 2013-06-11 13:23:54 +02:00
Clement Jamin bc360c8b13 Changes for GCC compilation + removed some trailing spaces 2013-06-07 17:40:53 +02:00
Clement Jamin 440a654a58 Added a concurrency-safe version of DT3::find_conflicts + better doc 2013-06-05 17:23:19 +02:00
Clement Jamin b43f28c6ab Renamed p_could_lock_zone + use NULL instead of 0 + CGAL_TRIANGULATION_3_PROFILING 2013-06-05 13:44:34 +02:00
Ross Hemsley 4d9caf3763 Added names that were missing into the Doxyfile.in entries. 
Also modified Installation/CMakeLists.txt to push the version number variable to the parent level
so that it can be accessed by the documentation
 2013-05-30 17:55:43 +02:00
Philipp Möller d4e379ba82 Small fixes in the generated Doxyfile.in 2013-05-30 15:32:33 +02:00
Philipp Möller 4d469821f7 Generated Doxyfile.in and dependencies 2013-05-30 14:13:47 +02:00
Jane Tournois 6b63e0585c fix documentation of inexact_locate 2013-05-30 11:02:17 +02:00
Jane Tournois efec975bd8 add comment about what inexact_locate returns when triangulation is not in full dimension 2013-05-28 16:08:05 +02:00
Jane Tournois af93d9b5ad doc improvement suggested by Monique 2013-05-28 16:03:27 +02:00
Clement Jamin dbe1c9c597 Reversed the "facet_not_in_its_cz" variables by removing the "not" 2013-05-28 15:56:22 +02:00
Clement Jamin eeeb6cc841 Smaller tag names (continued) 2013-05-28 15:42:39 +02:00
Clement Jamin 127926aa14 Proof-reading + minor changes 
Renamed unlock_all_tls_locked_locations => unlock_all_points_locked_by_this_thread
 2013-05-28 15:07:20 +02:00
Sébastien Loriot 6cea5e34e7 add missing deprecated commands 2013-05-28 14:26:36 +02:00
Sébastien Loriot 2d947dc1d6 new cgal doxygen debug macro to put the text inside a div 2013-05-28 13:24:24 +02:00
Sébastien Loriot 170c619a2d fix places where the <div> added by cgalAdvanced conflicts with other html tags 2013-05-28 09:51:49 +02:00
Sébastien Loriot 7e15467c72 new cgal doxygen advanced macro to put the text inside a div 2013-05-27 19:36:33 +02:00
Clement Jamin 9aefdbe939 Replaced is_base_of by is_convertible. 2013-05-23 17:49:24 +02:00
Clement Jamin 4a3a43d0e6 Minor fix + output 2013-05-23 17:48:32 +02:00
Clement Jamin f555e6bc49 Updated T3 benchmark 2013-05-23 14:23:58 +02:00
Clement Jamin 86c223059e Untabify 2013-05-23 13:50:19 +02:00
Clement Jamin c471fb442d Untabify + removed useless spaces 2013-05-21 11:13:36 +02:00
Sébastien Loriot 8d602ed8c2 Merge branch 'triangulation_3-copy_tds-sloriot' 
Approved by the release manager

Conflicts:
	Alpha_shapes_3/test/Alpha_shapes_3/copy_tds.h
	Triangulation_2/doc/TDS_2/Concepts/TriangulationDataStructure_2.h

it introduces a more general copy_tds that allows to copy tds with different types of simplices.
 2013-04-29 11:09:01 +02:00
Sébastien Loriot 4231db6412 add missing \ccc in doc_tex 2013-04-29 10:44:51 +02:00
Laurent Rineau 76da6cf570 Add missing #include 
That fixes the compilation when no <CGAL/Gmp*.h> header is included.
 2013-04-24 12:57:57 +02:00
Sébastien Loriot 0138f3639d fix typo 2013-04-19 14:50:43 +02:00
Sébastien Loriot 0beb1a8861 add an extra overload to please MSVC 2013-04-19 08:38:56 +02:00
Jane Tournois edf8dbccc7 fix documentation as asked by small feature 'inexact_locate' reviewers 2013-04-18 13:32:36 +02:00
Clement Jamin afde58115f Better phrasing in documentation 2013-04-17 17:34:33 +02:00
Andreas Fabri 169b10eea7 Add a missing ';' 
(cherry picked from commit 2f95d1584a)
 2013-04-17 17:11:27 +02:00
Clement Jamin 972d5e1898 Removed some useless "CGAL::" 2013-04-17 16:07:29 +02:00
Clement Jamin f381378d19 Updated Triangulation_3 doc (parallel version) 2013-04-16 16:28:10 +02:00
Clement Jamin 6cc5d746aa Removed a warning 2013-04-16 16:25:16 +02:00
Laurent Rineau 8eb51bee7a Reformat the long list of #ifdef/#else 
And display the typeid of the kernel, for checking.
 2013-04-16 16:08:33 +02:00
Clement Jamin 3a4caaaa1c Changed the place of the erase counters. 
Changed Compact_container_strategy_XXX::Uses_erase_counter type + moved the erase counters from Triangulation_ds_xxx_base_3 to Mesh_xxx_base_3.
 2013-04-16 15:31:36 +02:00
Sébastien Loriot 498492e770 add set_infinite_vertex to Triangulation_3 and use it with copy_tds 
the 2D version already exists
 2013-04-12 16:04:59 +02:00
Sébastien Loriot f9e0c97aac for convenience add a default to simple converter 
it is useful if you want to copy the tds of a familly
alpha-shape into a fixed one
 2013-04-11 20:03:32 +02:00
Sébastien Loriot 0a1bb3e4cd boolean set to false at the first run, otherwise it is always true 2013-04-11 19:05:18 +02:00
Sébastien Loriot 260e99ef20 add points created in the triangulation 2013-04-11 18:13:02 +02:00
Clement Jamin a1b0c5110e Updated triangulation benchmark (better parallel remove) 2013-04-11 17:51:36 +02:00
Clement Jamin b2199fb7d0 Documentation of concurrency-safe removal and parallel removal 2013-04-11 14:50:37 +02:00
Clement Jamin e7d6352f0b Bugfix: "remove(first, beyond)" was missing from the documentation 
(cherry picked from commit f69d3e5e88)
 2013-04-11 14:45:39 +02:00
Jane Tournois 7a530ea7d8 remove just_incident_cells. 
The bench I made did not show that it provided any computation time improvement.
 2013-04-11 12:48:04 +02:00
Clement Jamin 2a7c402c07 Regular_triangulation_3 is now parallel (insert/remove) 2013-04-10 18:08:53 +02:00
Clement Jamin 6a85889a1e New constructor + minor changes 2013-04-10 18:07:14 +02:00
Clement Jamin c1b940f27b Updated doc 2013-04-10 18:06:10 +02:00
Clement Jamin 758feff78e Updated benchmark (parallelism) 2013-04-10 18:04:16 +02:00
Clement Jamin f69d3e5e88 Bugfix: "remove(first, beyond)" was missing from the documentation 2013-04-10 17:30:12 +02:00
Clement Jamin 66ccf85368 Additionnal constructor 2013-04-08 10:52:45 +02:00
Clement Jamin ef756afafd Missing "dummy function" for the sequential case 2013-04-03 17:35:24 +02:00
Clement Jamin 1cc98e9abd Updated doc + code clean-up 2013-04-03 17:34:21 +02:00
Clement Jamin 9766784933 Updated doc of the parallel T3 and DT3. 2013-04-03 15:30:29 +02:00
Laurent Rineau e5b1cb5337 Fix the documentation of Regular_triangulation_::dual(Cell_handle) 2013-04-03 12:23:56 +02:00
Clement Jamin 0cee45bfb6 Updated documentation of T3 and DT3. 2013-04-02 17:41:19 +02:00
Clement Jamin e6b33376bb Avoid multiple calls to tbb::enumerable_thread_specific::local() 2013-03-29 17:16:26 +01:00
Andreas Fabri a25077bf90 Add Leda 2013-03-29 14:54:11 +01:00
Laurent Rineau d09971b3c3 Update the picture of Triangulation_utils_3 (was unreadable) 2013-03-28 14:51:56 +01:00
Jane Tournois 59f7e9d919 fix typo 2013-03-28 14:19:22 +01:00
Andreas Fabri 24334fd46a Merge branch 'master' of ssh://scm.cgal.org/var/git/cgal 2013-03-28 10:46:50 +01:00
Clement Jamin 4399f8218b Untabify (missed some of them last time) 2013-03-28 10:13:32 +01:00
Andreas Fabri f7d7395864 Merge branch 'OLD' into CGAL-use_leda-GF 
Conflicts:
	Boolean_set_operations_2/test/Boolean_set_operations_2/test_polygon_validation.cpp
	Envelope_2/test/Envelope_2/test_envelope_segments.cpp
	Intersections_3/test/Intersections_3/bbox_other_do_intersect_test.cpp
 2013-03-27 20:22:54 +01:00
Clement Jamin 8c19195bcb Untabify 2013-03-27 15:32:10 +01:00
Clement Jamin cc9dde002e Untabify 2013-03-27 15:30:46 +01:00
Clement Jamin c3e9699887 Clean-up + better "profiling" 2013-03-27 14:39:10 +01:00
Clement Jamin 9b3b218b9c Bugfix 
The sequential version doesn't know what "TBB" is!
 2013-03-27 14:31:09 +01:00
Clement Jamin db6b4e9559 Updated the demo (parallel code) 2013-03-27 14:02:09 +01:00
Clement Jamin de1f43e30b The remove is now fully parallel. 
The remove operations are done in parallel as long as the dimension stays = 3, then the few remaining points are removed sequentially.
 2013-03-27 13:47:40 +01:00
Laurent Rineau b6ffa7c425 Merge branch 'CGAL-fix_warnings-GF' 
That branch was successfully tested in CGAL-4.2-Ic-205.
 2013-03-27 12:23:31 +01:00
Clement Jamin 57d84ecb24 New constructor for Tri_3 and TDS + new way of testing "dim down" in the 3D case 
New constructor taking 4 non-coplanar vertices, for faster construction of very small triangulations => a 3D triangulation is directly constructed.
The new "test_dim_down_using_incident_cells_3" is used in the 3D and will be used by the parallel version.
 2013-03-26 19:00:37 +01:00
Laurent Rineau 846c627aeb Better linking to the other function 2013-03-25 12:41:04 +01:00
Andreas Fabri ae58f3896a also use leda if it is installed 2013-03-24 17:48:33 +01:00
Jane Tournois 35120cdf53 small feature documentation about inexact_locate 2013-03-22 15:46:38 +01:00
Jane Tournois d67db385fa Merge branch 'Mesh_3-improvements-GF-old' into Mesh_3-improvements-GF 
Conflicts:
	Mesh_3/include/CGAL/refine_mesh_3.h
 2013-03-21 11:22:15 +01:00
Sébastien Loriot 9fcf46e11a replace CGAL_[kernel/qpe/triangulation/]_assertion by assert in tests 
this should be the case, following our guidelines.

using:
find */test/* -name '*.[hc]*' | xargs sed -i 's/CGAL_assertion/assert/g'
 2013-03-21 10:50:55 +01:00
Andreas Fabri 7bd3e3698e use CGAL::compare instead of compare to avoid Koenig lookup 2013-03-15 17:34:53 +01:00
Clement Jamin dd0fa839ca Doc fix 2013-03-14 17:49:44 +01:00
Clement Jamin b83b159c2f Fix so that we don't require xx_erase_counter functions anymore when sequential 2013-03-14 17:45:19 +01:00
Andreas Fabri 2f95d1584a Add a missing ';' 2013-03-14 14:02:31 +01:00
Alexandros Konstantinakis-Karmis 3b1d281efb Abbreviations trigger end of \brief description 
Fixes bug #15482:
https://gforge.inria.fr/tracker/index.php?func=detail&aid=15482&group_id=52&atid=13845
 2013-03-13 11:58:56 +01:00
Sébastien Loriot e991fe72ad really add last missing classified reference manual pages 2013-03-13 10:57:01 +01:00
Clement Jamin 1f0e994a00 Renamed a few functions + tabs to spaces conversion + benchmark output + minor changes 2013-03-11 15:46:27 +01:00
Clement Jamin dc13ea964d Triangulation_3 documentation updated. 2013-03-11 15:35:56 +01:00
Clement Jamin 6fbf3a9ec1 Documentation 2013-03-08 18:04:58 +01:00
Clement Jamin a7cfd06598 Replaced the unused pair<bool,int> returned by try_lock by a simple bool. 2013-03-08 16:47:37 +01:00
Clement Jamin 3eae2927e7 Merge branch 'Mesh_3-parallel-cjamin-old' into Mesh_3-parallel-cjamin 2013-03-04 15:50:57 +01:00
Clement Jamin a8d38a5fed Code clean-up 2013-02-28 19:46:06 +01:00
Laurent Rineau bc7e2a1d71 Merge remote-tracking branch 'origin/Mesh_3-improvements-GF' into Mesh_3-improvements-GF-new 
Mesh_3-improvements-GF-new is fresh fork of master

Conflicts:
	.gitattributes
	AABB_tree/include/CGAL/AABB_tree.h
	GraphicsView/src/CGAL_Qt4/DemosMainWindow.cpp
	Mesh_3/include/CGAL/Mesh_3/C3T3_helpers.h
	Mesh_3/include/CGAL/Mesh_3/Refine_facets_3.h
	Mesh_3/include/CGAL/Polyhedral_mesh_domain_3.h
 2013-02-28 17:10:16 +01:00
Laurent Rineau bd0930fc26 Fix segfaults in T3, caused by the use of CGAL_assume 
I wonder why the compiler created buggy code. Anyway, I found easy
workarounds, without reintroducing the warnings.
 2013-02-22 16:15:04 +01:00
Laurent Rineau 2d8da664a3 Merge branch 'CGAL-fix_warnings-gdamiand' 
Conflicts:
	.gitignore
	Skin_surface_3/examples/Skin_surface_3/CMakeLists.txt
 2013-02-22 13:02:37 +01:00
Laurent Rineau 66c5d23154 Use CGAL_assume to remove warnings 2013-02-20 18:55:43 +01:00
Clement Jamin a29a847e55 Some tests with parallel removal of vertices. 2013-02-20 17:39:15 +01:00
Laurent Rineau 26a7e70785 New license.txt files (eol changes) 
The new version 2.13.0 of licensecheck has changed the spaces at eol.
 2013-02-19 16:46:39 +01:00
Clement Jamin 44b8217d54 New/modified constructors for triangulations. 
Can now take a lock data structure as parameter.
 2013-02-19 10:39:39 +01:00
Clement Jamin 864f4eca81 Moved Spatial_grid_lock_data_structure_3.h to STL_Extension 2013-02-18 13:09:12 +01:00
Clement Jamin 8d5352e15f Better grid lock data structure. 
There is just one grid lock data structure class now, with several specialization.
Moreover, now the type of the lock data structure is only defined in the triangulation.
 2013-02-18 12:58:57 +01:00
Clement Jamin 0c80db26d4 Forgot to remove an #include 2013-02-18 11:16:45 +01:00
Clement Jamin bce43fbb8e Improved the way parallelism is handle in Mesh_3/Triangulation_3 
Added a better support for parallelism in Triangulation_3.
Simplified how to enable/disable concurrency in Mesh_3.
Moved the Compact_container stategies to a new file.
 2013-02-15 18:07:43 +01:00
Andreas Fabri 8b5b56adb1 make index an unsigned int 2013-02-15 11:30:08 +01:00
Andreas Fabri 516579f454 reverse accidental commit of a cmake target 2013-02-15 09:27:12 +01:00
Andreas Fabri abab3ad602 Suppress warnings in spatial_sort used with a QList. 
The bug of Qt is that they have ptrdiff_t as difference type,
but they only provide   iterator + int  and not
iterator + difference_type
 2013-02-14 15:38:05 +01:00
Clement Jamin eb2ed63d8b Changed the way we activate concurrency in Triangulation_3 + Code clean-up 2013-02-11 19:12:30 +01:00
Andreas Fabri f8b8e7c643 0.1 -> 0.1f to avoid a warning 2013-02-08 12:45:30 +01:00
Mariette Yvinec d21d374732 added a circumcenter member function 
to be used for cached weigthed circumcenters.
 2013-02-07 19:07:42 +01:00
Laurent Rineau 70bf8d7e88 New branch to add c->circumcenter (and the verson with cache) to RT3 2013-02-07 19:07:42 +01:00
Andreas Fabri afeea1e124 replace size_t with int in loops over the vertices of a cell 2013-02-07 17:26:32 +01:00
Andreas Fabri c029f702a3 use more types 2013-02-07 11:02:14 +01:00
Clement Jamin c4859681e3 Removed the "localization ids" related code. 
It was an old, unused and slow.
 2013-02-06 18:57:36 +01:00
Clement Jamin cb89562205 Removed the CGAL_MESH_3_ACTIVATE_GRID_INDEX_CACHE_IN_VERTEX macro. 
It was buggy and useless.
 2013-02-06 18:10:35 +01:00
Andreas Fabri 27812333bf more CGAL_USE_TYPE 2013-02-06 15:53:02 +01:00
Clement Jamin 5938113aff Moved some code because there was a problem with some #ifdef 2013-02-06 14:30:04 +01:00
Sébastien Loriot d9f815fd63 adding a missing grouping 2013-02-06 09:57:23 +01:00
Clement Jamin dc5e90b8cc Clean-up + some debugging functions + comments 2013-02-02 06:53:43 +01:00
Andreas Fabri 13bac84716 less warnings in various packages 2013-02-01 10:27:07 +01:00
Andreas Fabri 93e7fe275b less warnings in Triangulation_3 2013-01-31 15:50:13 +01:00
Clement Jamin 2ee92ca346 Missing #ifdef 2013-01-30 17:30:31 +01:00
Clement Jamin ad4a9dcaf6 New is_element_locked_by_this_thread for testing purposes 2013-01-29 19:03:07 +01:00
Sébastien Loriot 13a72756b8 Move the Vertex and Cell concepts outside of the class and add typedefs 
The typedefs Vertex and Cell was missing in the concept
TriangulationDataStructure_3
 2013-01-24 12:22:12 +01:00
Sébastien Loriot 4104ad62df fix broken reference to figure 2013-01-24 11:20:20 +01:00
Sébastien Loriot c3b8cef1b8 using template alias declarations to document rebind classes in TDS3 2013-01-24 11:17:57 +01:00
Clement Jamin 7af597cb4f Parallel Mesh_3 can now be compiled with GCC 2013-01-17 14:49:04 +01:00
Clement Jamin 3dd7981cf4 The erase counter in vertex_base is only required for the parallel version. 2013-01-15 17:05:24 +01:00
Clement Jamin 44e91351ce Code clean-up + minor changes/optimizations 2013-01-11 16:40:03 +01:00
Andreas Fabri 0955b5de75 typo which ends \brief to early 2013-01-08 10:29:16 +01:00
Clement Jamin 7efd61b6db Removed some data race conditions in the parallel perturber. 
Note: the code needs some clean-up
 2013-01-08 08:59:17 +01:00
Sébastien Loriot 5ec28b1cf4 replacing the usage of section in user man by \cgalHeading macro call 2013-01-07 18:04:37 +01:00
Sébastien Loriot efae8622fd package name is 3D TriangulationS 2013-01-07 10:54:22 +01:00
Sébastien Loriot 5f3c8826d1 h2 is the first header in classified reference manuals 2013-01-07 09:00:48 +01:00
Sébastien Loriot 7e095c7a7a Merge branch 'Documentation-flat-ref-manual-pmoeller' 2013-01-04 15:19:57 +01:00
Sébastien Loriot 42d15a11d0 using uniform markups in classified reference pages 2013-01-04 15:16:40 +01:00
Sébastien Loriot c44c259361 classified ref man for TDS3 2013-01-04 10:55:32 +01:00
Sébastien Loriot 3b77b25c23 classified ref man for Triangulation_3 2013-01-04 10:55:28 +01:00
Sébastien Loriot 9631c3444c name link to chapters 2013-01-02 23:00:56 +01:00
Andreas Fabri 610de5e0ea polish TDS_2 2012-12-28 21:46:44 +01:00
Sébastien Loriot 82b2ebc865 apply the cpp0x namespace renaming in all files 2012-12-19 11:33:17 +01:00
Sébastien Loriot c625218033 incorrect documented returned type 2012-12-19 10:23:38 +01:00
Sébastien Loriot 97e076f0ca add example to copy triangulations with points from different kernels 2012-12-19 09:32:33 +01:00
Sébastien Loriot aeb1edeae8 Merge branch 'triangulation_3-copy_tds-sloriot-old' into triangulation_3-copy_tds-sloriot 2012-12-18 19:57:32 +01:00
Sébastien Loriot 6ca36dfcce add documentation for copy_tds 2012-12-17 16:40:05 +01:00
Sébastien Loriot 7843d7ce20 using internal::TDS_3 namespace 2012-12-17 16:39:04 +01:00
Clement Jamin dc7096b1e5 This parallel version of the Perturber seems much better. Needs to be tested... 2012-12-13 20:39:37 +01:00
Laurent Rineau b058829649 Partially un-math the doxygen documentation of Triangulation_3 2012-12-13 16:06:56 +01:00
Philipp Möller 75f69570dc Change the titles of mainpages to "User Manual" 
This leads to a slightly odd result in the search for "User Manual",
but makes the pages themselves more consistent.
 2012-12-13 14:47:09 +01:00
Philipp Möller 3e98c46535 Correct syntax for uniform initialization 2012-12-12 11:24:34 +01:00
Philipp Möller ae1b135c54 Replace usage of CGAL_CFG_ARRAY_MEMBER_INITIALIZATION_BUG 2012-12-11 17:46:14 +01:00
Sébastien Loriot c25f925174 renaming functor in copy_tds 2012-12-05 12:43:54 +01:00
Sébastien Loriot 6152194fa8 remove boolean for first vertex 2012-12-05 12:43:54 +01:00
Sébastien Loriot 47fea6c6f1 merge experimental-packages/Triangulation_3_copy_tds to a proper branch 2012-12-05 12:43:53 +01:00
Clement Jamin 9c5cddbbc3 Global optimizers: better parallel performance 
- We used to have a thread-local variable for cell::TDS_data to make
  incident_cells concurrently callable but it was slow and memory-consuming
  => new incident_cells function which do not use cell::TDS_data
  => faster and lighter
- update_restricted_delaunay now uses parallel_for instead of parallel_do
  (it was quite slow with the implicit oracle)
  => faster (but requires to fill a temporary vector)
 2012-11-28 14:17:59 +01:00
Sébastien Loriot 4ec9529581 Merge branch 'doxy-port-pmoeller' 
Conflicts:
	.gitattributes
	Surface_reconstruction_points_3/include/CGAL/Poisson_reconstruction_function.h
	Surface_reconstruction_points_3/include/CGAL/Reconstruction_triangulation_3.h
	Surface_reconstruction_points_3/include/CGAL/k_nearest_neighbor.h
 2012-11-27 10:05:41 +01:00
Sébastien Loriot 9576be3c3b add doc in dont_submit 2012-11-27 08:42:02 +01:00
Sébastien Loriot 920eb63882 backporting documentation changes of master@9fcc5b57 into doxy-port-pmoeller 
Conflicts:
	Arrangement_on_surface_2/doc/Arrangement_on_surface_2/CGAL/Arr_linear_traits_2.h
	Installation/doc_tex/Installation/usage.tex
	Kernel_23/doc/Kernel_23/CGAL/Projection_traits_xy_3.h
	Mesh_2/doc/Mesh_2/Concepts/ConformingDelaunayTriangulationTraits_2.h
	Spatial_searching/doc/Spatial_searching/CGAL/Incremental_neighbor_search.h
	Spatial_searching/doc/Spatial_searching/CGAL/K_neighbor_search.h
	Spatial_searching/doc/Spatial_searching/CGAL/Orthogonal_incremental_neighbor_search.h
 2012-11-23 22:54:31 +01:00
Sébastien Loriot 6cc7d66415 Revert "Replace tex-style quotes with quotes that you would expect, as there" 
This reverts commit e65a8028ea.

Conflicts:
	Approximate_min_ellipsoid_d/doc_tex/Bounding_volumes_ref/Approximate_min_ellipsoid_d.tex
	Approximate_min_ellipsoid_d/documentation/mel.tex
	Documentation/doxyassist.xml
	Installation/doc_tex/Installation/usage.tex
	Min_sphere_of_spheres_d/doc_tex/Bounding_volumes_ref/MinSphereOfSpheresTraits.tex
	Optimisation_doc/doc_tex/Bounding_volumes/user_part.tex
	Optimisation_doc/doc_tex/Inscribed_areas/user_part.tex
	Width_3/doc_tex/Polytope_distance_d_ref/Width_3.tex
 2012-11-23 18:08:13 +01:00
Sébastien Loriot 7cd0e93fa9 Revert "Merge the changes to ccPrecond and ccPostcond that have been in" 
This reverts commit b529971917.

Conflicts:
	Approximate_min_ellipsoid_d/doc_tex/Bounding_volumes_ref/Approximate_min_ellipsoid_d.tex
	Matrix_search/doc_tex/Polytope_distance_d_ref/spec_all_furthest_neighbors.tex
	Min_annulus_d/doc_tex/Bounding_volumes_ref/Min_annulus_d.tex
	Min_circle_2/doc_tex/Bounding_volumes_ref/Min_circle_2.tex
	Min_ellipse_2/doc_tex/Bounding_volumes_ref/Min_ellipse_2.tex
	Min_quadrilateral_2/doc_tex/Bounding_volumes_ref/spec_oops.tex
	Min_sphere_d/doc_tex/Bounding_volumes_ref/Min_sphere_d.tex
	Min_sphere_of_spheres_d/doc_tex/Bounding_volumes_ref/MinSphereOfSpheresTraits.tex
	Min_sphere_of_spheres_d/doc_tex/Bounding_volumes_ref/Min_sphere_of_spheres_d.tex
	Surface_mesh_parameterization/doc_tex/Surface_mesh_parameterization_ref/Taucs_matrix.tex
	Surface_mesh_parameterization/doc_tex/Surface_mesh_parameterization_ref/Taucs_symmetric_matrix.tex
	Triangulation_2/doc_tex/Triangulation_2_ref/Constrained_triangulation_2.tex
	Width_3/doc_tex/Polytope_distance_d_ref/Width_3.tex
 2012-11-23 18:04:33 +01:00
Sébastien Loriot 61fa49b242 Revert "break apart multi-cites, TO BE UNMERGED" 
This reverts commit 5688d58b1b.

Conflicts:
	Matrix_search/doc_tex/Bounding_volumes_ref/spec_rectangular_p_centers.tex
 2012-11-23 18:01:10 +01:00
Sébastien Loriot ae8362b7d6 replace \cgalModels ::FOO by \cgalModels `FOO` 
using:
 perl  -pi -e 's/\\cgalModels\s+::([A-Za-z0-9_:]+)\s*$/\\cgalModels `$1`\n/'
 2012-11-23 09:37:53 +01:00
Clement Jamin 11a2a1c68a Merge from Mesh_3-improvements-GF 2012-11-21 17:49:59 +01:00
Clement Jamin ab4d97c1e5 The global optimizers are now parallel (needs some intense testing now) 2012-11-21 16:16:47 +01:00
Andreas Fabri a4a825d8cf more \tparam 2012-11-21 14:36:38 +01:00
Andreas Fabri c7dc4a8bcd Switch to \tparam 2012-11-21 14:04:46 +01:00
Sébastien Loriot 2b0f810c02 use figure macros 2012-11-21 11:06:44 +01:00
Sébastien Loriot c2d57c1740 fix mismatch of {} 2012-11-21 11:06:44 +01:00
Andreas Fabri 4283174bb0 Add vertex_triple_index 2012-11-21 10:25:09 +01:00
Clément Jamin ffc70d4482 Added support for concurrency to "locate" + minor changes 2012-11-20 15:16:21 +01:00
Andreas Fabri 625f9f6cd7 after git merge remotes/origin/hot-fixes-for-Git 2012-11-20 13:02:17 +01:00
Laurent Rineau 57a58d00a3 Triangulation_cell_base_with_circumcenter_3::invalidate_circumcenter() must 
be public.

That is required by the slivers exuder.
 2012-11-20 10:25:47 +01:00
Philipp Möller 2f1e33a211 Fix unclosed figure command 2012-11-19 14:45:39 +01:00
Sébastien Loriot 8d741d504d remove % in section name 2012-11-14 16:10:15 +01:00
Laurent Rineau 4509b5bbe2 Merge branch 'master' into improvements 
Conflicts:
	Mesh_3/include/CGAL/Mesh_3/mesh_standard_facet_criteria.h
 2012-11-14 12:17:29 +01:00
Sébastien Loriot 128b02abb8 update CGAL custom doxygen macros 
corresponds to a run of the script Documentation/conversion_tools/rename_macros.sh
+manual edit of doxyassist.xml and pkglist_filter.py
 2012-11-14 00:31:05 +01:00
Sébastien Loriot 5ee1081f92 using cgal macros for all figures 2012-11-08 17:17:29 +00:00
Sébastien Loriot ae159cbdf3 replace markup #, ##, ### by \section, \subsection and \subsubsection 
(script replacement)
 2012-11-06 22:02:15 +00:00
Andreas Fabri 7a6634b5a7 No need for CGAL:: in user manuals 2012-10-31 20:11:16 +00:00
Sébastien Loriot 825bfe6144 make create_star_3 non recursive only after 100 recursive calls. 
The speed observed on random data set produced by simple_2.cpp is equivalent
to the original recursive version and faster than the version better this commit
 2012-10-30 13:42:47 +00:00
Andreas Fabri 4486d2f912 \refines must be backquoted in order to be typeset as code 2012-10-24 19:36:25 +00:00
Philipp Möller 31e9eadf8b Fix all PackageDescriptions to a newer layout 2012-10-19 15:52:31 +00:00
Philipp Möller e51849bd87 add some more nesting to triangulation 2012-10-19 09:00:01 +00:00
Clément Jamin 74fad3a088 Typo 2012-10-19 08:50:18 +00:00
Andreas Fabri d18c87c820 simplify grouping 2012-10-18 12:46:14 +00:00
Clément Jamin 8a12c83451 The parallel version can now use safely FORCE_STRUCTURAL_FILTERING (optimization from GF-Improvements) 2012-10-17 16:33:37 +00:00
Clément Jamin 1ca7174e01 Merge from Mesh_3-improvements-GF 
+ some bugfixes (most of them are related to the parallel version)

This version works (sequential and parallel) as long as the following macros are NOT defined:
* CGAL_COMPACT_MESH_VERTEX_CELL
* CGAL_INTRUSIVE_LIST
* FORCE_STRUCTURAL_FILTERING
 2012-10-16 14:02:16 +00:00
Clément Jamin 4e1f8aa4f8 Merge from next 2012-10-15 08:28:01 +00:00
Andreas Fabri 71073be43a cleanup 2012-10-13 19:57:27 +00:00
Andreas Fabri 185f71b812 cleanup 2012-10-12 11:50:36 +00:00
Andreas Fabri 6c4e159c54 Locate type no longer is top level 2012-10-12 10:19:14 +00:00
Laurent Rineau a53fd8c9c4 merge changes from next 2012-10-09 13:08:52 +00:00
Andreas Fabri d0931017d6 Add \ after i.e. 2012-10-09 12:36:01 +00:00
Laurent Rineau 795c71fc9b Fix headers of Mesh_2 and Mesh_3. All were missing #include. 
I found out that way that <CGAL/Mesh_3/Refine_facets.h> and
<CGAL/Mesh_3/Protect_edges_sizing_field> were using global functions
instead of functors of the traits class.

Note also the funny bug that <CGAL/Regular_triangulation_cell_base_3.h> was
depending on <CGAL/Triangulation_vertex_base_3.h>!
 2012-10-08 09:33:38 +00:00
Laurent Rineau cf87ecd497 Rename a test to avoid a conflict 
There was a target name conflict with
  Triangulation_2/test_triangulation_tds.cpp
 2012-10-05 14:22:15 +00:00
Laurent Rineau fa1583936d Fix a Doxygen error: '#' is a special character for Doxygen 
Because of the Javadoc compatibility, "#" is equivalent to "::".
 2012-10-04 08:25:28 +00:00
Philipp Möller bc48dfe5a0 Be consistent about author/authors 2012-10-03 16:40:16 +00:00
Andreas Fabri 492ed4d969 improve \brief 2012-10-03 09:29:56 +00:00
Andreas Fabri e94cb4cb90 linking 2012-10-03 09:06:26 +00:00
Andreas Fabri 05a078ba00 spread doc 2012-10-03 08:39:20 +00:00
Philipp Möller 272a52ee44 Do a global pass over Doxygen warnings/errors. 2012-10-02 15:12:54 +00:00
Philipp Möller c9fdbf3edb Add an anchor to each level one heading, so we get a nice tree in the 
user manuals.
 2012-10-02 11:53:01 +00:00
Philipp Möller a2f6aa1d5e Minor grouping fixes, linebreaks. 2012-10-02 09:51:54 +00:00
Andreas Fabri ad668f822d spread doc 2012-10-02 08:04:09 +00:00
Philipp Möller 37778547bf Fix example to point to paths similar to a flat layout 2012-10-01 18:02:44 +00:00
Clément Jamin 2366fee1e1 Merge from next 2012-09-28 14:51:02 +00:00
Philipp Möller b64ba48134 The changes to move the package overview labels into the 
PackageDescription.
 2012-09-25 17:17:49 +00:00
Philipp Möller 128c228b4a Remove some glitches in Arrangement_2. 
Exclude some symbols to end up with a nicer index.
 2012-09-21 14:56:17 +00:00
Philipp Möller 0aa7cd1c3b Global heading reduction. Rename some Parameter section to Template 
Parameters. Fix dependencies.
 2012-09-21 09:42:24 +00:00
Philipp Möller 1954eff3d6 * build normalized mainpage anchors 
* better naming for Pkg commands
* User and Reference Manual links from the PackageOverview
 2012-09-20 15:30:03 +00:00
Philipp Möller 1b3a78a08f Salvage the demo information from the old package description. 2012-09-20 13:30:49 +00:00
Andreas Fabri 6f61e2b2ee Downsize headings 2012-09-17 14:53:05 +00:00
Andreas Fabri c8a4c77dcf Put \ after . in order to avoid a line break (why is it there??) 2012-09-15 17:11:15 +00:00
Andreas Fabri e88484ecc8 add autotoc and fix an e.g. 2012-09-15 16:39:55 +00:00
Philipp Möller 864aebe2e5 Merge next. 
This commit also updates the respective mock-headers when the
corresponding .tex documentation has changed. This has been the case for:

AABB_tree/doc_tex/AABB_tree_ref/AABBGeomTraits.tex
AABB_tree/doc_tex/AABB_tree_ref/AABBTraits.tex
AABB_tree/doc_tex/AABB_tree_ref/AABB_traits.tex
Mesh_3/doc_tex/Mesh_3_ref/parameters_features.tex
Mesh_3/doc_tex/Mesh_3_ref/parameters_no_features.tex
Number_types/doc_tex/NumberTypeSupport_ref/Interval_nt.tex
Number_types/doc_tex/NumberTypeSupport_ref/Lazy_exact_nt.tex
Spatial_searching/doc_tex/Spatial_searching_ref/Search_traits_2.tex
Spatial_searching/doc_tex/Spatial_searching_ref/Search_traits_3.tex
Triangulation_2/doc_tex/Triangulation_2_ref/Constrained_Delaunay_triangulation_2.tex
 2012-09-12 14:14:22 +00:00
Andreas Fabri f1ef0eee60 This \sigma was \large in the .tex 2012-09-03 10:19:59 +00:00
Andreas Fabri 823642ab00 fix typo 2012-09-03 10:09:37 +00:00
Laurent Rineau 085d89112a Remove the trailing space. That creates a bug in pkglist_filter.sh 2012-09-03 09:51:46 +00:00
Andreas Fabri fb03c5d62a spread documentation; + misc 2012-08-31 14:00:25 +00:00
Philipp Möller 348abcc67e Add Triangulation_3 2012-08-30 17:30:48 +00:00
Philipp Möller 9bd80b4d43 Removed left over file 2012-08-30 16:28:30 +00:00
Philipp Möller a877b12875 Add TDS_3 2012-08-30 15:43:59 +00:00
Jane Tournois 3555cf3cb2 make just_incident_cells_3 the default use of incident_cells(v) 
replace macro CGAL_JUST_INCIDENT_CELLS with CGAL_TDS_3_NOT_JUST_INCIDENT_CELLS (and reverse use), and comment it in config.h
 2012-08-28 09:01:47 +00:00
Laurent Rineau a5cbb18b4b Merge change from next 2012-08-22 15:19:59 +00:00
Laurent Rineau 2db4effa7e CMake: Fix the handling of cmake_policy 
That is a followup-to my commit last year:
  | ------------------------------------------------------------------------
  | r63198 | lrineau | 2011-04-28 19:45:22 +0200 (Thu, 28 Apr 2011) | 5 lines
  | 
  | Try to fix my last revision about cmake_policy, with CMake-2.6.x
  | 
  | CMake gives an error if one tries to use cmake_policy(VERSION x.y.z) if
  | x.y.z is greater than the current CMake version.
  | 
  | ------------------------------------------------------------------------

The following check:
  if("${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION}" VERSION_GREATER 2.6)
is useless just after a call to:
 cmake_minimum_required(VERSION 2.6.2)



The script used to fix that was:


#!/usr/bin/env perl

$replacement=<<'END';
if("${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION}.${CMAKE_PATCH_VERSION}" VERSION_GREATER 2.8.3)
  cmake_policy(VERSION 2.8.4)
else()
  cmake_policy(VERSION 2.6)
endif()
END

while(<>) {
    if(/if\("\${CMAKE_MAJOR_VERSION}.\${CMAKE_MINOR_VERSION}" VERSION_GREATER 2.6\)/) {
        while(<>) {
            if(/^endif\(\)/) {
                print "$replacement";
                while(<>) {
                    print;
                }
                exit 0
            }
        }
    }
    print;
}
 2012-08-22 12:35:03 +00:00
Philipp Möller 5688d58b1b break apart multi-cites, TO BE UNMERGED 2012-08-17 13:17:11 +00:00
Laurent Rineau bdabbdf7e6 merge from next 2012-08-02 16:05:01 +00:00
Laurent Rineau 4c3e1c3138 Fix mixed eol styles 2012-08-02 13:35:03 +00:00
Philipp Möller e65a8028ea Replace tex-style quotes with quotes that you would expect, as there 
is no way to handle them in the converter.

Needs to be revert before this is being merged into next.
 2012-08-02 12:55:15 +00:00
Laurent Rineau c58bd4f8fb Merge from next up to revision 70936 2012-08-02 12:18:09 +00:00
Jane Tournois abc1515741 r70387, r70573, r70574 from Mesh_3-experimental-GF 
Add incident_cells_3(Vertex_handle, std::vector<Cell_handle>)

This function avoids the construction of two additional std::vectors.
The performance gain is between 30% (g++) and 50% (VC++)
for points on surfaces as well as for points filling space.

We at the same time change the implementation of the function
incident_cells(Vertex_handle, OutputIterator).
In order to save one additional std::vector,
the cells are reported in bfs and not in dfs order
 2012-07-31 14:44:45 +00:00
Jane Tournois 7d169b85f8 r70573 from Mesh_3-experimental-GF 
add macro to force Structural_filtering
 2012-07-31 14:14:25 +00:00
Jane Tournois db9f968ea9 r70321 from Mesh_3-experimental-GF 
Change inexact_locate and inexact_orientation from protected to public (needed for the commit in Mesh_3 concerning inexact_locate in Mesh_sizing_field)
 2012-07-31 13:30:29 +00:00
Marc Glisse 0a40b7c0e2 Unused variable warnings 2012-07-28 11:15:45 +00:00
Philipp Möller 495fac8ea1 Merge from next 2012-07-27 17:58:52 +00:00
Samuel Hornus 2223726370 merge from next 2012-07-18 15:42:06 +00:00
Clément Jamin 1c664776c9 The parallel version can now be built with GCC 2012-07-10 16:53:34 +00:00